Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5c/seq/ZK892.4
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Query: ZK892.4 CE18469 L-carnitine dehydratase status:Partially_confirmed SW:Q09618 protein_id:CAA88571.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
CAIB-BAIF CAIB/BAIF family 306.0 1.2e-91 1
Translat_reg Bacteriophage transcriptional regulator 4.4 5 1
Neuregulin Neuregulin family 1.7 4.7 1
DUF19 Domain of unknown function DUF19 1.7 6.5 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Translat_reg 1/1 53 69 .. 1 17 [. 4.4 5
DUF19 1/1 53 73 .. 23 43 .. 1.7 6.5
CAIB-BAIF 1/1 54 246 .. 1 215 [] 306.0 1.2e-91
Neuregulin 1/1 298 314 .. 389 406 .] 1.7 4.7
Alignments of top-scoring domains:
Translat_reg: domain 1 of 1, from 53 to 69: score 4.4, E = 5
*->miEikLKkPEDFLKvKE<-*
m + LK+PED Kv++
ZK892.4 53 MKQLDLKNPEDIKKVRD 69
DUF19: domain 1 of 1, from 53 to 73: score 1.7, E = 6.5
*->vdfLDmsdkkelkkFkkSCds<-*
++ LD++++++ kk+++ C +
ZK892.4 53 MKQLDLKNPEDIKKVRDLCQT 73
CAIB-BAIF: domain 1 of 1, from 54 to 246: score 306.0, E = 1.2e-91
*->vtLDlKseeGreifleLakkADVliEnfrPGvlerlGityevlkevN
+LDlK++e+ + +++L++++DVl++++rPG+le++G+++ +l+++N
ZK892.4 54 KQLDLKNPEDIKKVRDLCQTSDVLLDPYRPGTLEKMGLDPSTLWNNN 100
PrLIyasvSGFGQtGedaedpysdraaYDiiaQAlsGvlsttGfpdedpP
+LI++++SG+GQtG ++s+ +++Di+++AlsG+l t+ +++++P
ZK892.4 101 KGLIICKISGYGQTG-----RMSQETGHDINYVALSGMLPTFSGVNATRP 145
lkpgnylaDfvgGGlyaaiGILAALyeRerTG.rGqviDiAmfeavlrvl
++p+n+laDf+gGGl aa+GIL+A+y R ++G++G+ D++m+e+v+ +l
ZK892.4 146 WPPANMLADFAGGGLSAAFGILSAIYARSHNGgKGCLLDCSMTEGVA-YL 194
ryfmrdyqatGklGpLekwpePNeFGDVpRggnkddggaPyylfyckGWe
+ f+++y++++ +++++ + + ++ g +P+y++y++
ZK892.4 195 SSFVQHYYDQP-----NLFTD-------K--YALFSGECPIYRTYKT--- 227
rDGkivivgaiepqfwkal<-*
+D+k+v+vga+ep+f+++l
ZK892.4 228 KDDKFVAVGAVEPKFYQNL 246
Neuregulin: domain 1 of 1, from 298 to 314: score 1.7, E = 4.7
*->nPasRFstqEELqARLss<-*
nP+ R tq+EL A Lss
ZK892.4 298 NPSPRVWTQDELAA-LSS 314