hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm5c/seq/ZK863.4
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Query:  ZK863.4  CE23469    status:Partially_confirmed TR:Q23652 protein_id:CAB01456.1

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N
--------  -----------                                   -----    ------- ---
PAP_assoc PAP/25A associated domain                      55.1    1.6e-14   1
RdRP      RNA dependent RNA polymerase                    1.9        6.4   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
RdRP        1/1     110   119 ..   441   450 .]     1.9      6.4
PAP_assoc   1/1     382   437 ..     1    67 []    55.1  1.6e-14

Alignments of top-scoring domains:
RdRP: domain 1 of 1, from 110 to 119: score 1.9, E = 6.4
                   *->dAVDfpKtGv<-*
                      dA+Df Kt++
     ZK863.4   110    DAIDFMKTSQ    119

PAP_assoc: domain 1 of 1, from 382 to 437: score 55.1, E = 1.6e-14
                   *->sLGvLLigFFeyYgrreFdyedfvIsirtGqsgsllpKeekgwdkkn
                       ++ +++++F+yY++  Fd+++++I+ +    + +++K  + ++ +
     ZK863.4   382    DYCKFFRELFKYYAN--FDFTNKAIYGK----KAMQKKTLSSAHGG- 421

                   vlnirqpspLcIeDPfdtsn<-*
                       +++spL+++DP+d+++
     ZK863.4   422 ----VEESPLMLMDPMDITH    437

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