Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5c/seq/ZK858.6
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Query: ZK858.6 CE16751 Yeast endomsomal P24A protein like status:Partially_confirmed TR:Q94422 protein_id:CAB02141.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
EMP70 Endomembrane protein 70 1184.8 0 1
LysE LysE type translocator 4.8 4.9 1
Mrp10 Mrp10 protein 4.4 7.4 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Mrp10 1/1 409 418 .. 85 94 .] 4.4 7.4
LysE 1/1 431 448 .. 102 119 .] 4.8 4.9
EMP70 1/1 89 614 .. 1 600 [] 1184.8 0
Alignments of top-scoring domains:
Mrp10: domain 1 of 1, from 409 to 418: score 4.4, E = 7.4
*->YHlARLydll<-*
YH+ RLy+ +
ZK858.6 409 YHAGRLYKTM 418
LysE: domain 1 of 1, from 431 to 448: score 4.8, E = 4.9
*->ltwfwflifsaaflqpil<-*
+t+f++li++a+fl++++
ZK858.6 431 ATLFPSLILGAGFLLNFF 448
EMP70: domain 1 of 1, from 89 to 614: score 1184.8, E = 0
*->epYeYYserLPFCrPekgtiekksEsLGYEVLrGDRivnSpYklkfl
+p+eYYs PFC+P +g+i++ksE+LG EV+rGDRivn+pY+++++
ZK858.6 89 MPFEYYS--VPFCKPANGDIQYKSENLG-EVMRGDRIVNTPYAFHMK 132
enkecevlCkvkkypldklskedvklfreaIekeYyvqwiiDnLPvatfv
+n++c+++C++ klske+v+lf+e+I++eY ++i+DnLPvat +
ZK858.6 133 KNEQCVSVCSN------KLSKENVALFKERIRQEYSAHLIVDNLPVATVI 176
gkvdnkdykgvgfesGfrlGeqGidieAcplnnlyKdeeKyylfnHldfv
+ ++ ++v++++G+rlG++G d+ K++l+nHl+fv
ZK858.6 177 NPAQS---GDVYYDLGYRLGWIG-------------DNAKVFLNNHLQFV 210
ieYHdrdndddglesyRvVgfeVkprSikhsselkndegtCslpdkysss
++YH+++++ yRvVgfeV+prSi+ ++knd+gtCs+pd + +
ZK858.6 211 VKYHQHTPGL-----YRVVGFEVRPRSIS---ATKNDDGTCSMPD--DGT 250
pqeldEdkendtEleltFTYSVkWkesdvkWasRWDkYLdsgffDmhdvq
+++ d+e+ +++F+YSV ++esdv+WasRWD+YL+ ++ v+
ZK858.6 251 KHVELGDSEQ----SVDFSYSVAFEESDVPWASRWDVYLT-----TKAVD 291
IHWFSIiNSlviVlFLsGiVsmIlmRTLrrDiarYneldeeeeaeerDDD
IHWFSI+NS+v+Vl+LsG+Vs+ ++RT+rrDia+Yn++dee+ D
ZK858.6 292 IHWFSILNSIVVVLSLSGFVSVTIVRTVRRDIAQYNRDDEED-------D 334
aqEEsGWKLVHGDVFRpPrPNLFnpmLLsalvGsGvQlllMvlitivfAc
++EE+GWKLVHGDVFRpP+ ++m+L+++vG+G+Qll+M+ i++v+A+
ZK858.6 335 TLEETGWKLVHGDVFRPPP----HQMILVNMVGTGIQLLGMSAIVVVCAM 380
lGfLsPssRGsLlTaaifLYaltGfvaGYvSarlYktfkGkrkkWkrnli
lG+LsP+sRGsL++aa+fL++++G+++GY+++rlYkt+kG+ +++r+++
ZK858.6 381 LGMLSPASRGSLMSAAVFLFCFMGLISGYHAGRLYKTMKGR--NPIRCAV 428
LTaflfPGivFgiffvLNfvlwgkhSSgAvPFgTmvaLlllWflisvPLt
+Ta+lfP +++g++f+LNf+l+gkhSSgAvPFgTmvaLl++Wf+i++PL+
ZK858.6 429 QTATLFPSLILGAGFLLNFFLIGKHSSGAVPFGTMVALLIMWFCIDMPLI 478
flGgyfGfNIPLPQRkralefehPVRTNqIPRqIPeqpWYlspipsilmg
flG+yfG+ Rk+++ +hPVRTNqIPRq+PeqpW+l+ ips+l++
ZK858.6 479 FLGFYFGY------RKQPY--THPVRTNQIPRQVPEQPWFLRLIPSSLIA 520
GiLPFGaIfIELfFIftSlWlnkTTiYYmFGFLFlVFiILvivcaevtIv
G+LPFGa+fIELfFIf+++W+n+ +YY+FGFLF+V iIL i++a++++v
ZK858.6 521 GVLPFGAMFIELFFIFNAIWENQ--FYYLFGFLFIVSIILAISTAQISVV 568
lTYFqLRFCaEDKVVRYrWWWRSFltsGfstavYVFlYSifYfftKlkis
TYF+L CaE+ YrWWWRSF++sG ++++YV++Y++fY++tKl+i+
ZK858.6 569 ATYFSL--CAEN----YRWWWRSFVISG-GSSFYVMAYAVFYYNTKLTIE 611
Gfv<-*
Gfv
ZK858.6 612 GFV 614