Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5c/seq/ZK856.1
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Query: ZK856.1 CE06658 locus:cul-5 Cullin family status:Partially_confirmed SW:Q23639 protein_id:CAA94852.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Cullin Cullin family 1184.0 0 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Cullin 1/1 1 741 [] 1 850 [] 1184.0 0
Alignments of top-scoring domains:
Cullin: domain 1 of 1, from 1 to 741: score 1184.0, E = 0
*->vdfeetWekLkpginqilrnekdmadTnvdvrksmtklsymeLYtnV
++f+e+W+k +p+++++l+ +ks+t++ +++L+++V
ZK856.1 1 MQFDEEWSKADPIVHALLH------------QKSVTPAAWQDLFYHV 35
YniclskslstslrgSpvrtggAdrlGekLYnrLkeyvVifaklikeyva
Y+i+ ++ d+++ k+++ L+++ i++yv+
ZK856.1 36 YKITSWV----------------DDGPLKIRDILTRC-------INDYVH 62
alrkrvWislsndellLetyvkeWerftvsakiinniFkYLnrvwvkker
+++kr+ +sl++d++lL+ y+keW+rf+++a+i++ +Fk++++ +++
ZK856.1 63 EANKRI-RSLQTDGSLLIGYIKEWNRFYQQANILPLPFKKIDESSRRRS- 110
sTdlDlfaqYaavdgkepiyeiytLaLdiWkevlfknFikdklidalLel
++++p + i+t++L+ W+e++f+n i+++l+ ++L+l
ZK856.1 111 -------------VPETPEESIRTVMLEKWNEIIFMN-ISEQLLVEALRL 146
ieleRkGniinrahlisgvveslveLgiddsDtdAkeakkkklsvYkesF
+++eR+Gnii+ + +++g++es+v+L++++++ ++l vY++sF
ZK856.1 147 VKEERDGNIIDAQ-NVIGIRESFVALNDRAGE--------DPLLVYRQSF 187
EkpFLsaTeefYkkessnyLqelnsvteYmkkaekrLeeEseerakrYLh
E++F+++T+e+Ykk++ n+L+el +v eYm++a+k+LeeE ++rakrYL+
ZK856.1 188 ERQFIEQTTEYYKKICGNLLNEL-GVLEYMVYADKKLEEE-QQRAKRYLE 235
esRsntkkkLlevcenvLItshldtLhaefsggvkelidakkiedLqrmY
++ s+t k++e+ + +L++s++dt++ae+s+ li +k+ e+Lqr+Y
ZK856.1 236 MN-SPTSGKHMEKAVIALVESFEDTILAECSK----LIASKDVERLQRLY 280
rLlrrvpnGeleelrksleeyikkeGlnaisnlaseagegkMklallsal
rL+rr++ G +++++k+++++i++eGln+++n+a ++ l
ZK856.1 281 RLIRRTRSG-IDTVLKCIDTHIRTEGLNDMRNNA--EN-----------L 316
atdPktyVqeLLevhkkfssLvntaFnsavdDagflqaLDkAfetFVNsn
+tdP++yVq+LL +++kfssLv++ F+ dDa++l+a+DkAf+++VN+
ZK856.1 317 STDPERYVQQLLLMFDKFSSLVREGFC---DDARLLTARDKAFRAVVNDS 363
evsklappaks......ssksaELLAkYcDdLLkKsklsKkadetelEdk
++k+++++k++++ + +sk+aELLA+YcD+LL+K++lsKk++++e+++k
ZK856.1 364 SIFKTEMMNKKgrtlsvESKCAELLANYCDLLLRKTQLSKKLTSEEIDEK 413
LdevivvFkYiedKDVFekyYkkmLAKRLiletSaSdDaEemMisKLKqa
L++v++v+kY+e+KDVF+++++++L++RLile+Sa++++EemM++KL+++
ZK856.1 414 LNQVLLVLKYVENKDVFMRFHRAHLSRRLILEMSADQEKEEMMVTKLREC 463
cGPyefTsKLerMFqDislSkdLnqsFkhslaNadmakpkyiDfnvrVLt
++P++ ++KL+rM+qDi+l+kd+n+sFk++l++++++k++++++n++VL+
ZK856.1 464 GMPSDAVNKLSRMLQDIELNKDMNSSFKKALTGTNNNKSIADSINMKVLN 513
sgaWPtqstspsveisLPkeLedsleeFeeFYsskHnGRKLtWlhsLsrG
gaW + +s+++++sLP+eLed+++ e+ + + ++GR
ZK856.1 514 GGAWGRG-GSERIRFSLPRELEDFVP--EMVFGTANGGR----------- 549
evkanfnpgkkatYvLqvttfQmaiLLlFNdrlrdsitveeiqeltdaTe
++L++ttfQma+L++FNdr++d+i++e++++ aTe
ZK856.1 550 -------------FDLECTTFQMAVLFCFNDRAHDKISLETLRL---ATE 583
ipedeLkrtlqSLllikakvlvllkkskkedevKesereltpdtkFsvNe
+p++eL+rtl+SL++++++++++l+++ ++++v ++r++t++tkF +N+
ZK856.1 584 LPDAELNRTLLSLVAYPKMRYQILLCDVPSTTV--TARDFTDSTKFLINH 631
nFs.sknKkvRvkinanlvqplqkeaeqEteevhetVeeDRklelqAaIV
+F+ +kn k ++++++nl+++lq++ e ++e++he ++ +R+l++q+ IV
ZK856.1 632 DFNvVKNGKSQQRGKVNLIGRLQLSLEANAEKEHESIVALRELRVQEGIV 681
RIMKaRKkLkHnqLvtEviqQlksRFkPsvsmIKkcIEsLIEKeYleRde
+I+K+RK+++ +qL++E++++lk+ F+P++++IK++I++LIE++Y+eR++
ZK856.1 682 KILKTRKTYTLAQLTMELVEILKPLFIPNRKIIKEQIDWLIENKYMERRA 731
ddkdtYeYLA<-*
dd++t+ Y++
ZK856.1 732 DDINTFVYIS 741