Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5c/seq/ZK829.4
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Query: ZK829.4 CE06652 glutamate dehydrogenase status:Confirmed TR:Q23621 protein_id:CAA98074.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
GLFV_dehydrog Glutamate/Leucine/Phenylalanine/Valin 325.1 8e-94 1
GLFV_dehydrog_N Glu/Leu/Phe/Val dehydrogenase, dimeri 202.7 5.3e-57 1
AdoHcyase_NAD S-adenosyl-L-homocysteine hydrolase, 7.6 0.52 1
U-box U-box domain 5.8 0.96 1
TrkA-N TrkA-N domain 5.0 6.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
U-box 1/1 108 120 .. 69 81 .] 5.8 0.96
GLFV_dehydrog_N 1/1 90 222 .. 1 179 [] 202.7 5.3e-57
AdoHcyase_NAD 1/1 274 306 .. 18 50 .. 7.6 0.52
TrkA-N 1/1 281 308 .. 1 28 [. 5.0 6.6
GLFV_dehydrog 1/1 241 532 .. 1 289 [] 325.1 8e-94
Alignments of top-scoring domains:
U-box: domain 1 of 1, from 108 to 120: score 5.8, E = 0.96
*->ekIdafleekrea<-*
e+I+a+ ++++e+
ZK829.4 108 EVIEAWRAQHSEH 120
GLFV_dehydrog_N: domain 1 of 1, from 90 to 222: score 202.7, E = 5.3e-57
*->pervievripvedDdGsvkvfkGyRaqHnFhevYqRsalGPkeaiYa
++v+ ++p+++D+G+ +v++++RaqH+ ++P
ZK829.4 90 VNKVLYITFPIRRDNGEFEVIEAWRAQHS-------EHRTP------ 123
hiGaiFinhFFhiRFRDiaKGGiRfhpsvnedealdevkaLafeMtyKnA
+KGGiR+ +v devkaL+ MtyK+A
ZK829.4 124 ------------------TKGGIRYSLDVC----EDEVKALSALMTYKCA 151
ladLPfGGGKGGiivDPkklsdeEleRlcrrFvteLykiliiGpdrDvPA
++d+PfGG+KGG+++DPk+++d E+e+++rr e +k++++Gp +DvPA
ZK829.4 152 VVDVPFGGAKGGVKIDPKQYTDYEIEKITRRIAIEFAKKGFLGPGVDVPA 201
pDvgkeeiLFtgpreGtaGFmawmadeyrkit<-*
pD+g tg+re m+w+ad+y+ +
ZK829.4 202 PDMG------TGERE-----MGWIADTYAQTI 222
AdoHcyase_NAD: domain 1 of 1, from 274 to 306: score 7.6, E = 0.52
*->DvmiaGKvavvcGYGDVGKGcAasLkgqGArVi<-*
D+ +aGK+a++ G+G+VG L +G++Vi
ZK829.4 274 DTGLAGKTAIIQGFGNVGLHTHRYLHRAGSKVI 306
TrkA-N: domain 1 of 1, from 281 to 308: score 5.0, E = 6.6
*->hfiviGlGrvGrsvakeLleeGhdVvvI<-*
+ i+ G+G vG++ + L++ G +V+ I
ZK829.4 281 TAIIQGFGNVGLHTHRYLHRAGSKVIGI 308
GLFV_dehydrog: domain 1 of 1, from 241 to 532: score 325.1, E = 8e-94
*->GGSlgRpeGATGyGVvyfvremlkklggsds..lgedleGktVavQG
GG++gR++ ATG+GV+ +++ + +++ ++++ +l+++l Gkt ++QG
ZK829.4 241 GGIHGRVS-ATGRGVWKGLEVFTNDADYMKMvgLDTGLAGKTAIIQG 286
fGNVGqyaAekllelGAkvvavsDsdGsyyiydpdGiDpekleellelke
fGNVG ++ ++l+++G kv+++ + d ++y+pdGi p +el+++k+
ZK829.4 287 FGNVGLHTHRYLHRAGSKVIGIQEYDC--AVYNPDGIHP---KELEDWKD 331
ergsggFDSKLsvtgyageeedhnvtisnaellegdrPWrntfhlwvkcD
++g ++++++g+++ + + el++++ cD
ZK829.4 332 ANG--------TIKNFPGAKN----FDPFTELMYEK------------CD 357
ViavPCAtqneindenNAaalikagGcckvvaEGANmPtTpeAdeileea
i+vP+A ++ i++en a +i+a k++aE+AN+PtTp+Ad+il+++
ZK829.4 358 -IFVPAACEKSIHKEN--ASRIQA----KIIAEAANGPTTPAADRILLAR 400
gGilyaPDkaaNAGGVivSylEmvQNsqrlswt.................
g +l++PD ++N+GGV+vSy+E+++N++++s+++ + + +++ ++ +
ZK829.4 401 GDCLIIPDMYVNSGGVTVSYFEWLKNLNHVSYGrltfkydeeankmllas 450
.................................VdekLkdiMkeifeaik
+++ ++ +++ + +++ + + ++++ V++ L+ +M++ eai+
ZK829.4 451 vqeslskavgkdcpvepnaafaakiagasekdiVHSGLEYTMQRSGEAII 500
etaekefeynvnehqvadgeltdlrtaAniaafervadAmkaqG<-*
+ta+k yn++ d rtaA+ +++e+v++ ++ +G
ZK829.4 501 RTAHK---YNLG---------LDIRTAAYANSIEKVYNTYRTAG 532