hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm5b/seq/ZK792.6
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Query:  ZK792.6  CE03827  locus:let-60 LET-60 RAS protein status:Confirmed SW:P22981 protein_id:CAA92630.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
ras      Ras family                                     344.8   2.5e-101   1
ldh      lactate/malate dehydrogenase, NAD binding do     7.5        1.1   1
IE68     Herpesvirus immediate early protein              4.8        6.6   1
VanY     D-alanyl-D-alanine carboxypeptidase              4.0        4.5   1
arf      ADP-ribosylation factor family                   3.9        5.4   1
GcpE     GcpE protein                                     0.4         10   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ldh        1/1       1    32 [.     1    37 [.     7.5      1.1
VanY       1/1      14    32 ..   169   187 .]     4.0      4.5
IE68       1/1     101   121 ..   112   133 .]     4.8      6.6
arf        1/1     144   166 ..   169   191 .]     3.9      5.4
GcpE       1/1     158   173 ..   582   597 .]     0.4       10
ras        1/1       5   184 .]     1   198 []   344.8 2.5e-101

Alignments of top-scoring domains:
ldh: domain 1 of 1, from 1 to 32: score 7.5, E = 1.1
                   *->kkptKVaVvGAGGgVG.sslAfalanlqgladEqpIiL<-*
                      +  +K  VvG+G gVG+s+l + l+ ++++++E    +
     ZK792.6     1    MTEYKLVVVGDG-GVGkSALTIQLI-QNHFVEE----Y    32

VanY: domain 1 of 1, from 14 to 32: score 4.0, E = 4.5
                   *->VGvkaaalikkfcltleeY<-*
                      VG+ a+++++++++ +eeY
     ZK792.6    14    VGKSALTIQLIQNHFVEEY    32

IE68: domain 1 of 1, from 101 to 121: score 4.8, E = 6.6
                   *->erflypppdipnplfaeecdVs<-*
                      +r + +++d+p  l +  cd s
     ZK792.6   101    RR-VKDSDDVPMVLVGNKCDLS    121

arf: domain 1 of 1, from 144 to 166: score 3.9, E = 5.4
                   *->csAvkGeGLyEGldWLsnnikkr<-*
                      +sA +++G++E++  L++ i k
     ZK792.6   144    TSAKTRMGVDEAFYTLVREIRKH    166

GcpE: domain 1 of 1, from 158 to 173: score 0.4, E = 10
                   *->eLielieklakekepe<-*
                      +L+++i+k+ + ++++
     ZK792.6   158    TLVREIRKHRERHDNN    173

ras: domain 1 of 1, from 5 to 184: score 344.8, E = 2.5e-101
                   *->KlVliGDsGVGKSsLliRFtdnkFveeYipTIGvDFytktvevDGkt
                      KlV++GD+GVGKS+L+i+ ++n+FveeY+pTI +D+y+k+v++DG+t
     ZK792.6     5    KLVVVGDGGVGKSALTIQLIQNHFVEEYDPTI-EDSYRKQVVIDGET 50

                   vkLqIWDTAGQERFralrpaYYRgAqGfLLVYDITsrdSFenvkkWleei
                   + L+I+DTAGQE+++a+r++Y+R+++GfLLV++++ ++SFenv++++e+i
     ZK792.6    51 CLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNEAKSFENVANYREQI 100

                   lrhadkdenvpivLVGNKcDLeddedleltegqkRvVsteeGealAkelg
                   +r++d+d+ vp+vLVGNKcDL             R V++ +  + Ak +g
     ZK792.6   101 RRVKDSDD-VPMVLVGNKCDLSS-----------RSVDFRTVSETAKGYG 138

                   AlpFmETSAKtntNVeeaFeelareilkkvsevnvnldqpakkkkskCci
                    +p + TSAKt+++V+eaF++l+rei+k +     +++++++kk +kC i
     ZK792.6   139 -IPNVDTSAKTRMGVDEAFYTLVREIRKHR---ERHDNNKPQKK-KKCQI 183

                   l<-*
                   +
     ZK792.6   184 M    184

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