Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm5b/seq/ZK757.3b
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Query:  ZK757.3b  CE24737    status:Predicted TR:Q9TW94 protein_id:CAB54514.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
Piwi     Piwi domain                                    525.1   4.9e-154   1
PAZ      PAZ domain                                     159.4    1.3e-44   1
TehB     Tellurite resistance protein TehB                2.8        7.7   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TehB       1/1     442   453 ..     1    14 [.     2.8      7.7
PAZ        1/1     371   506 ..     1   161 []   159.4  1.3e-44
Piwi       1/1     657   963 ..     1   341 []   525.1 4.9e-154

Alignments of top-scoring domains:
TehB: domain 1 of 1, from 442 to 453: score 2.8, E = 7.7
                   *->FYCkkeDYFhKKYn<-*
                        C  +DYF+ KY+
    ZK757.3b   442    --CSVADYFSEKYG    453

PAZ: domain 1 of 1, from 371 to 506: score 159.4, E = 1.3e-44
                   *->lpvlelledyltertsiklsdrdrkkvkealkGlkVetthrnnkglq
                      ++ l + +d+l+++t  +ls+++ + +  a++G+k+ ++hr n
    ZK757.3b   371    GNGLTFTMDTLSRDT--QLSSFETRIFGDAIRGMKIRAAHRPN---- 411

                   eaprkykiaglssnpaplskFplkdnnGneegkeitvaeYFkekYnirLk
                    a r+yk+++l  ++++l+++  ++++++   + ++va+YF ekY+ +Lk
    ZK757.3b   412 -AIRVYKVNSLQLPADKLMFQGIDEEGRQ---VVCSVADYFSEKYG-PLK 456

                   ypdlPllvvggrsknlNlLPRfnkrnsqknylPpELcsivpgQrytkklf
                   yp+lP+l+vg++++n              ++lP+E+c i + Q+y+kk++
    ZK757.3b   457 YPKLPCLHVGPPTRN--------------IFLPMEHCLIDSPQKYNKKMS 492

                   erqtsalikkraqr<-*
                   e+qtsa ik++a
    ZK757.3b   493 EKQTSAIIKAAAVD    506

Piwi: domain 1 of 1, from 657 to 963: score 525.1, E = 4.9e-154
                   *->livvvlpddnkedlekflydeiKkreltelgipsQcvllktlkkksk
                      +i+vvl+++n ++     y+ +K   + ++gi+sQcvl+k++++ ++
    ZK757.3b   657    CIIVVLQSKNSDI-----YMTVKEQSDIVHGIMSQCVLMKNVSRPTP 698

                   qGgrltltNvilkanmKlGGlNyklniekeprckVCNemrviplkptlii
                   +    t++N++lk+nmK+GG+N++++ +k ++       ++++++pt+++
    ZK757.3b   699 A----TCANIVLKLNMKMGGINSRIVADKITN-------KYLVDQPTMVV 737

                   GfDvshppaRTkfDrenggrlnnpsvagvvasmdsphgtkfrgdvrlqpa
                   G+Dv+hp       +++++r+n+psva++va++d+ ++++++++v++q++
    ZK757.3b   738 GIDVTHP-------TQAEMRMNMPSVAAIVANVDL-LPQSYGANVKVQKK 779

                   gqElltdlkkgiiresLrsfykntrkkkPkrIivYRDGvSEGqfsqvlny
                   ++E + +l + +ire+++ fy++t+ +kP+rIivYRDGvSEGqfs vl++
    ZK757.3b   780 CRESVVYLLD-AIRERIITFYRHTK-QKPARIIVYRDGVSEGQFSEVLRE 827

                   EvnqikeackklsesyqeqePkltvIvvqKrHhtRfFasdksdggskaka
                   E++ i+ ac +++e+++   P++t+IvvqKrHh+R+F+++++d+  ++ka
    ZK757.3b   828 EIQSIRTACLAIAEDFR---PPITYIVVQKRHHARIFCKYQNDM--VGKA 872

                   qNvpPGTvVDdkitspeyydFylcsqagrqGTvkPthYtVlyDdigeyyl
                    NvpPGT+VD+ i+spe +dFylcs++g+qGT++P++Y+Vl D+++   +
    ZK757.3b   873 KNVPPGTTVDTGIVSPEGFDFYLCSHYGVQGTSRPARYHVLLDECK---F 919

                   sadelqdLTykLCymyqrvtrpvslPaPvyYAhllAkrgrnnlk<-*
                   +ade+q++Ty +C++y r+tr+vs+P+PvyYA+l+A+r+r++ k
    ZK757.3b   920 TADEIQSITYGMCHTYGRCTRSVSIPTPVYYADLVATRARCHVK    963



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