Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5b/seq/ZK742.4
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Query: ZK742.4 CE07640 status:Partially_confirmed TR:Q23091 protein_id:AAB04983.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
oxidored_FMN NADH:flavin oxidoreductase / NADH oxidas 23.0 2.3e-06 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
oxidored_FMN 1/1 107 210 .. 84 212 .. 23.0 2.3e-06
Alignments of top-scoring domains:
oxidored_FMN: domain 1 of 1, from 107 to 210: score 23.0, E = 2.3e-06
*->wkklteAVHenGskigvQlwhlGreakaeyledapkleKvlrvdgps
++k++ A ++n +++ Ql h+G+ a+ ey+ +++ +K +dg+
ZK742.4 107 YAKMARAMKANHALAIAQLNHPGAWAFTEYTDGSG--KKHIISDGAL 151
dpvnldeqlsslakesgnelYiareLtkeeIkeiiqeFvdAAkrAveiAG
d n++++ + ++ e+i+ v AAk+ + +G
ZK742.4 152 DILNAPKS-------------VVKS-------ELIDRVVYAAKLLSN-CG 180
fDgVEiHgAhGYLldqFLsPgsNkRtDeYGcG<-*
fDg+Ei A G L qFL++ NkRtDeYG G
ZK742.4 181 FDGIEINTAFGNLFCQFLLNN-NKRTDEYG-G 210