Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5b/seq/ZK686.3
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Query: ZK686.3 CE00457 status:Partially_confirmed SW:P34669 protein_id:AAA28222.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
OST3_OST6 OST3 / OST6 family 655.1 3.7e-193 1
GerA Bacillus/Clostridium GerA spore germination 3.1 4.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
GerA 1/1 123 135 .. 488 500 .] 3.1 4.8
OST3_OST6 1/1 1 326 [. 1 352 [] 655.1 3.7e-193
Alignments of top-scoring domains:
GerA: domain 1 of 1, from 123 to 135: score 3.1, E = 4.8
*->PlwtmkrRPkevs<-*
P++++k+RP++++
ZK686.3 123 PKLGAKKRPEQMD 135
OST3_OST6: domain 1 of 1, from 1 to 326: score 655.1, E = 3.7e-193
*->llltfaasvsqqksdadlsnkvvsLvsltsekgvIrlnddkfrklvk
+ll++++s++qq+ l++kv++Lv+lts+++++++n+dk+++lv+
ZK686.3 1 MLLAVYESAQQQT----LEDKVQNLVDLTSRQSIVKFNMDKWKTLVR 43
svspPRNySlIvmFtAlaphsrqCslCreaedEfqiVAnsWFDsirysss
++PRNyS+IvmFtAl+p+ +qC++C++a+dEf+iVAn s+ry+ss
ZK686.3 44 --MQPRNYSMIVMFTALSPG-VQCPICKPAYDEFMIVAN----SHRYTSS 86
esngtKlFFamVDfdePsktgpqvFQllnLNnaPhlvhFsPakgnpkdqF
e++++K+FF++VD+++ +pq+FQ++nLN+aP+l+hF+P+ g++k
ZK686.3 87 EGDRRKVFFGIVDYED----APQIFQQMNLNTAPILYHFGPKLGAKK--- 129
EWkrsdtmdlqdvGfeAEsiakFvadrTkitvrsifRPPnyskpQIGiiv
r+++md+q++Gf+A++i++Fvad+T+++vr ++RPPny++p +++
ZK686.3 130 ---RPEQMDFQRQGFDADAIGRFVADQTEVHVR-VIRPPNYTAP---VVI 172
allvalvgvllylkrnnLeflynksktiWaflalfivfamiSGqMwNhIR
al+val++++ly+krn+L+fl+n +t+W+f++l+i+f+++SGqMwNhIR
ZK686.3 173 ALFVALLLGMLYMKRNSLDFLFN--RTVWGFVCLAITFIFMSGQMWNHIR 220
gpPfahkdpedngkvvfihgsSqmQlvaEtfiVglLYaviallmvlLtev
gpPf++++p ++++++fihgs+q+Ql+aEt+iVglLYa+ia+++++++e+
ZK686.3 221 GPPFMITNP-NTKEPSFIHGSTQFQLIAETYIVGLLYALIAIGFICVNEA 269
akrsksidkrri.......kkayfidallaiflLvliivFFSfllsvFti
a++s+s+d+++++++ ++ +++++++++lai++Lv+i+vFFSfllsvF
ZK686.3 270 ADQSNSKDRKNAgkklnplSLLNIPTNTLAIAGLVCICVFFSFLLSVF-- 317
LdirskayGYPy<-*
rsk++GYPy
ZK686.3 318 ---RSKYRGYPY 326