Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5b/seq/ZK673.7
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Query: ZK673.7 CE01719 locus:tnc-2 troponin C status:Confirmed SW:Q09665 protein_id:CAA88482.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
efhand EF hand 109.8 5.3e-29 4
DUF372 Domain of unknown function (DUF372) 4.7 7 1
Peptidase_M16_C Peptidase M16 inactive domain 4.3 5.1 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
efhand 1/4 19 47 .. 1 29 [] 15.6 0.02
efhand 2/4 55 83 .. 1 29 [] 36.0 4.5e-08
DUF372 1/1 85 103 .. 33 51 .] 4.7 7
efhand 3/4 96 124 .. 1 29 [] 34.0 1.7e-07
Peptidase_M16_C 1/1 114 140 .. 170 197 .] 4.3 5.1
efhand 4/4 132 160 .] 1 29 [] 36.3 3.8e-08
Alignments of top-scoring domains:
efhand: domain 1 of 4, from 19 to 47: score 15.6, E = 0.02
*->elkeaFkefDkDgDGkIsfeEfkaalkkl<-*
++++ F++fDk g G+I ++l+++
ZK673.7 19 QFRKYFNMFDKEGKGYIRATQVGQILRTM 47
efhand: domain 2 of 4, from 55 to 83: score 36.0, E = 4.5e-08
*->elkeaFkefDkDgDGkIsfeEfkaalkkl<-*
+lk+++kefD+Dg+G+I+feEf a+++++
ZK673.7 55 DLKQLIKEFDADGSGEIEFEEFAAMVANF 83
DUF372: domain 1 of 1, from 85 to 103: score 4.7, E = 7
*->VsksnaeSLEkAIeESIkn<-*
V+ +n e+LE +E+ ++
ZK673.7 85 VNNENDEGLEEELREAFRL 103
efhand: domain 3 of 4, from 96 to 124: score 34.0, E = 1.7e-07
*->elkeaFkefDkDgDGkIsfeEfkaalkkl<-*
el+eaF+++Dk g+G+I++ +++++l++l
ZK673.7 96 ELREAFRLYDKEGNGYINVSDLRDILRAL 124
Peptidase_M16_C: domain 1 of 1, from 114 to 140: score 4.3, E = 5.1
*->lelileeleklaeeGiteeeleraknql<-*
+ +++ l++l ++ ++eeel++ ++ +
ZK673.7 114 VSDLRDILRALDDN-VSEEELDEMIAEI 140
efhand: domain 4 of 4, from 132 to 160: score 36.3, E = 3.8e-08
*->elkeaFkefDkDgDGkIsfeEfkaalkkl<-*
el+e+++e+D+Dg+G+++f+Ef+++++
ZK673.7 132 ELDEMIAEIDADGSGTVDFDEFMEMMSGE 160