Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5b/seq/ZK673.1
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Query: ZK673.1 CE16742 status:Partially_confirmed SW:Q09662 protein_id:CAA88486.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
ShTK ShTK domain 94.7 6.2e-27 2
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
ShTK 1/2 66 103 .. 1 44 [] 53.0 2.1e-14
ShTK 2/2 112 151 .. 1 44 [] 50.2 1.5e-13
Alignments of top-scoring domains:
ShTK: domain 1 of 2, from 66 to 103: score 53.0, E = 2.1e-14
*->tCvDyvDpasdCaawaslGefCnnppYyqdfmkenCpkTCGfCs<-*
tC D Dp++dC +++sl C+n + y+++++++CpkTCGfC+
ZK673.1 66 TCAD--DPNTDCTQYTSL---CSNAK-YTPLLQQFCPKTCGFCG 103
ShTK: domain 2 of 2, from 112 to 151: score 50.2, E = 1.5e-13
*->tCvDyvDpasdCaawaslGefCnnppYyqdfmkenCpkTCGfCs<-*
+Cv D++++Ca+w ++G+ C++ +Y+++ k++C+kTC++C+
ZK673.1 112 QCV---DSSTNCANWEKNGF-CSSTFYDCANKKQYCAKTCKLCT 151