Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm5a/seq/ZK637.1
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Query:  ZK637.1  CE06638   Sugar transporter status:Partially_confirmed SW:P30638 protein_id:CAA77460.1

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N
--------      -----------                               -----    ------- ---
sugar_tr      Sugar (and other) transporter             345.4   6.2e-100   1
ResB          ResB-like family                            2.0        7.3   1
Na_sulph_symp Sodium:sulfate symporter transmembrane      1.3        9.8   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
Na_sulph_symp   1/1     212   242 ..   553   585 .]     1.3      9.8
ResB            1/1     238   250 ..     1    13 [.     2.0      7.3
sugar_tr        1/1      72   514 ..     1   488 []   345.4 6.2e-100

Alignments of top-scoring domains:
Na_sulph_symp: domain 1 of 1, from 212 to 242: score 1.3, E = 9.8
                   *->vkdwWrlGfil.sIigliiwllvGalWWkaLglw<-*
                      + ++W +G+++++++ + ++ ++G   W+aL+ +
     ZK637.1   212    IESFWAIGAVFeALLAYFVMESFG---WRALMFL    242

ResB: domain 1 of 1, from 238 to 250: score 2.0, E = 7.3
                   *->vlrfLssLrlAIa<-*
                       l+fLssL+l+I+
     ZK637.1   238    ALMFLSSLPLGIF    250

sugar_tr: domain 1 of 1, from 72 to 514: score 345.4, E = 6.2e-100
                   *->valvaalgGgflfGyDtgviggflalidflfrfglltssgalasl..
                         v+alg+   f   + ++ g+++++d  +++++l s  + a++ +
     ZK637.1    72    --AVEALGF-GRFQLKLSILTGMAWMAD--AMEMMLLSLISPALAce 113

                   vgystvltglvvsifflGrliGslfaGklgdrfGRkksllialvlfviGa
                   +g+s+v+++lv++++f G++++s f+Gk++drfGR+k+l +++++++i++
     ZK637.1   114 WGISSVQQALVTTCVFSGMMLSSTFWGKICDRFGRRKGLTFSTLVACIMG 163

                   llsgaapgytTiGlwafyllivGRvlvGlgvGgasvlvPmYisEiAPkal
                   ++sg++p        +fy+l+++R l+G+g+Gg+ + v++Y +E+ P+a
     ZK637.1   164 VISGMSP--------HFYVLLFFRGLTGFGIGGVPQSVTLY-AEFLPTAQ 204

                   RGalgslyqlaitiGilvAaiiglglnktnndsalnswgWRiplglqlvp
                   R+++++l +++++iG+++ a+++++++++++        WR +++l+++p
     ZK637.1   205 RAKCVVLIESFWAIGAVFEALLAYFVMESFG--------WRALMFLSSLP 246

                   alllligllflPESPRwLvekgkleeArevLaklrgvedvdqeiqeikae
                    +++++++++lPES R+ ++ g+ e+A e+L+         ++++  + +
     ZK637.1   247 LGIFAVASFWLPESARFDMASGHPERALETLQA-------AARMNRVQLP 289

                   leatvseekagkaswgelfrgrtrpkvrqrllmgvmlqafqQltGiNaif
                   + + vs++kag+ s+g++  + + p++r++++++++++a++      a+
     ZK637.1   290 TGRLVSSTKAGSESRGDIANLLS-PDLRKTTILLWCIWAIT------AFS 332

                   YYsptifks...............vGvsdsvasllvtiivg..vvNfvfT
                   YY++++f++   +++++ +++  ++G +++v++ l+   +++ + ++++
     ZK637.1   333 YYGMVLFTTvlfqshdechgglfsNGTQMEVCQPLTRSDYFdlLSTTLAE 382

                   fvaLi...flvDrfGRRpllllGaagmaicflilgasigvallllnkpkd
                   f++Li + +++++fGR+++++l  a+ ai++++l       +++l++
     ZK637.1   383 FPGLIitvLIIEWFGRKKTMALEYAVFAIFTFLL-------YFCLDR--- 422

                   psskaagivaivfillfiafFalgwGpipwvilsElFPtkvRskalalat
                          + ++v+i++  af++ g+  +++v+++E++Pt +R+++l+ +
     ZK637.1   423 -------FTVTVLIFVARAFIS-GAFQCAYVYTPEVYPTTLRAVGLGTCS 464

                   aanwlanfiigflfpyitgaiglalggyvflvfagllvlfilfvfffvPE
                   a+ ++++++++       ++++  l++++++ +a+l+++++   + + +E
     ZK637.1   465 AMARIGAIVAS------EKSLS--LPIGIYGTAAILGLIAS---LSLPIE 503

                   TkGrtLEeieelf<-*
                   TkGr++  + +l
     ZK637.1   504 TKGRQM--MVRLT    514



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