Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5a/seq/ZK616.9
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Query: ZK616.9 CE26344 status:Partially_confirmed TR:Q9N4M7 protein_id:AAF60943.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
SapB_2 Saposin-like type B, region 2 31.2 1.4e-07 2
SapB_1 Saposin-like type B, region 1 4.6 7.3 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
SapB_2 1/2 85 119 .. 1 35 [] 31.7 1e-07
SapB_1 1/1 243 279 .. 1 39 [] 4.6 7.3
SapB_2 2/2 284 306 .. 1 23 [. 2.4 60
Alignments of top-scoring domains:
SapB_2: domain 1 of 2, from 85 to 119: score 31.7, E = 1e-07
*->sdqCkefVdqYgpliidlLesgldPkevCsklglC<-*
++qC +fV++ +p+i+ + +++ k+vC+++++C
ZK616.9 85 KEQCFAFVETSLPEIYYSINYDISSKDVCVRMNFC 119
SapB_1: domain 1 of 1, from 243 to 279: score 4.6, E = 7.3
*->dilCelCemvVkevenlLkdnkTqeeIlkaLeklCdlLP<-*
+C +Ce + + ++n+ +++I + + +C++L
ZK616.9 243 RLTCAFCERMLENAKNYAVTS--KTDITSFANTACASLA 279
SapB_2: domain 2 of 2, from 284 to 306: score 2.4, E = 60
*->sdqCkefVdqYgpliidlLesgl<-*
sdqC+++ d+ ++ + + +++
ZK616.9 284 SDQCYQMADKKIAELAKFVDQQV 306