Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5a/seq/ZK6.10
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Query: ZK6.10 CE29161 status:Confirmed TR:O61874 protein_id:AAG45576.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
DUF274 Protein of unknown function (DUF274) 703.9 7.5e-208 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF274 1/1 39 406 .] 1 410 [] 703.9 7.5e-208
Alignments of top-scoring domains:
DUF274: domain 1 of 1, from 39 to 406: score 703.9, E = 7.5e-208
*->veapyniYVSAssDDnslLqqIkvttgdgyqsktLdqLnqnrilqnd
v+apyn+YVSA+sDD+++LqqI+v+t++g +ktL++L++n lq +
ZK6.10 39 VDAPYNFYVSADSDDANVLQQISVVTESG--QKTLLELKNN--LQGY 81
GeiqpfpvsksayItTtLsdnttkkLtGvIYvTTskQanDptFsVYvVkd
Gei+pfpv +say+ T+Ls+++++kLtGvIY+++ kQ++D++F+VY+V+
ZK6.10 82 GEITPFPVLQSAYLITALSNDVLEKLTGVIYLSSTKQRADNNFHVYGVSA 131
aqtisitgmknvnsTiVfLNTnlrtlepsdyDqPrksSyvsnwnQtsnss
q+i++ g++nvn+Ti+fLNT++++ +p+ +sS++s+w+Q++n+
ZK6.10 132 PQNIQLLGLGNVNTTILFLNTYMSS-NPV------YSSTISQWHQNPNAV 174
lylYaGiPaDswtqPKFqektnnqiFsNPihtdngdtnkelknftrlFFd
++lYaG+P+Ds+ e +++qiFsNP+htd++d l+F+
ZK6.10 175 AFLYAGVPWDSI------ELKKTQIFSNPMHTDKAD----------LYFA 208
nVEpfqlsLgaFYiktsggvnFkIvpnkyvidgnYtTTsvtTTGfyMkpl
nVE+f++sL+aFY+kt++gvnFkI+p++ +id++ tTT+vtTTGfyMkp+
ZK6.10 209 NVEKFSISLPAFYLKTYRGVNFKIEPGYTSIDST-TTTNVTTTGFYMKPM 257
vyndsTvtVNikrDtrrsGtsGanvvgylptgdgnVtvgfydgsfkyeqt
+ + sT+tVNikrDtr+ G+sG+nv gy+ptg g+Vtvgfy+g++kyeq+
ZK6.10 258 GTVSSTITVNIKRDTRYPGASGVNVRGYVPTG-GKVTVGFYNGASKYEQS 306
vtpntynsqpwsiPkigaqtLtvsSTSSnslaGefYvQYFvfqGdllpit
++pn++ s +wsiP+i a +++vsSTSSnsla++++vQYFv+qG++++
ZK6.10 307 APPNEFLS-AWSIPYI-APMFKVSSTSSNSLAEQYFVQYFVAQGAMNG-- 352
ssvtTstPpqtttTTttSkaPqatgSvsaspttTsrieTTTKssgnvkLq
+tTs+P+q+t++++t ++P ++++pt++ ri+TTTKssg+v q
ZK6.10 353 --GTTSKPGQPTVPQPTLPGP-----TLPYPTVPGRIQTTTKSSGAV--Q 393
lfvslvtlsmlwl<-*
lfvs+ +++mlwl
ZK6.10 394 LFVSVTISMMLWL 406