hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm5a/seq/ZK593.7
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  ZK593.7  CE06628   Yeast JTA107 like status:Confirmed TR:Q23543 protein_id:CAA93428.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
Sm       Sm protein                                      74.9    7.3e-20   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Sm         1/1      14    87 ..     1    55 []    74.9  7.3e-20

Alignments of top-scoring domains:
Sm: domain 1 of 1, from 14 to 87: score 74.9, E = 7.3e-20
                   *->sfLkklidkrVlVeLknGreirGtLkgfDqfmNlvLddveEtl....
                       +L +++dk+++V++++Gre  G+L+gfDq +N+vLdd+ E+l++++
     ZK593.7    14    VDLTRFLDKEIRVKFQGGREASGVLRGFDQLLNMVLDDCREYLrdpq 60

                   ...............liRGnnvvlisp<-*
                   +++  ++++++ +  + RG+ ++++sp
     ZK593.7    61 npsvvgdetrqlgliVARGTAITVVSP    87

[DB home][top]