Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5a/seq/ZK524.4
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Query: ZK524.4 CE18454 serine\/threonine kinase status:Partially_confirmed TR:Q22855 protein_id:CAA98148.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
pkinase Protein kinase domain 265.6 6.4e-76 1
Telo_bind_a3 Telomere-binding protein alpha subunit 4.3 4.6 1
Transposase_14 Transposase 3.3 9.1 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Telo_bind_a3 1/1 11 24 .. 158 171 .] 4.3 4.6
Transposase_14 1/1 262 275 .. 108 121 .] 3.3 9.1
pkinase 1/1 27 279 .. 1 294 [] 265.6 6.4e-76
Alignments of top-scoring domains:
Telo_bind_a3: domain 1 of 1, from 11 to 24: score 4.3, E = 4.6
*->rdkgaYFIrdTrik<-*
r+k +IrdTri
ZK524.4 11 RRKSSLHIRDTRIA 24
Transposase_14: domain 1 of 1, from 262 to 275: score 3.3, E = 9.1
*->kdvqKRaElskIls<-*
++ qKRa l kI s
ZK524.4 262 REPQKRASLEKIVS 275
pkinase: domain 1 of 1, from 27 to 279: score 265.6, E = 6.4e-76
*->yelleklGeGsfGkVykakhkdktgkiVAvKilkkekesikek...r
y l +++G+G+f++V++akh+ tg+ VAvKi++ k +++e ++++
ZK524.4 27 YDLEKTIGQGHFAVVKLAKHV-FTGEMVAVKIID--KTKMDEAstsQ 70
flrEiqilkrLsHpNIvrligvfedtddhlylvmEymegGdLfdylrrng
+ E++ +k ++H NIvrl++v t +++ l++E+ + dL+d++ ++
ZK524.4 71 IMKEVRCMKLVQHANIVRLYEVLD-TQTKIFLILELGDY-DLHDFIIKHE 118
gplsekeakkialQilrGleYLHsngivHRDLKpeNILldendgtvKiaD
e a+ ++ Qi +++Y+H ++vHRDLKpeN+ + e+ g vK++D
ZK524.4 119 KGVCESLAQQYFCQIMTAIDYCHQLHVVHRDLKPENVVFFEKLGMVKLTD 168
FGLArllesssklttfvGTpwYmmAPEvileg.rgysskvDvWSlGviLy
FG++ +e+++ l+t +G++ Y APE+ l+g++++ ++vDvWSlGviLy
ZK524.4 169 FGFSNSYEPGEQLNTSCGSLAYS-APEI-LLGdSYDAPAVDVWSLGVILY 216
ElltggplfpgadlpaftggdevdqliifvlklPfsdelpktridpleel
l++g +lPf++ + +e
ZK524.4 217 MLVCG--------------------------RLPFQE-------ANDSET 233
friikrpglrlplpsncSeelkdLlkkcLnkDPskRpGsatakeilnhpw
+ i++ ++ +p+ +S+e++ L+ ++L + P+kR + + i+ w
ZK524.4 234 LTKILD--CKYSIPDVLSDECRNLIQSMLVREPQKRA---SLEKIVSTSW 278
f<-*
+
ZK524.4 279 V 279