Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm5a/seq/ZK524.2a
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Query:  ZK524.2a  CE15371  locus:unc-13 UNC-13 protein status:Partially_confirmed SW:P27715 protein_id:CAB07173.1

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N
--------        -----------                             -----    ------- ---
C2              C2 domain                               188.0    8.6e-53   3
DAG_PE-bind     Phorbol esters/diacylglycerol binding    86.8    4.5e-22   1
VPS9            Vacuolar sorting protein 9 (VPS9) dom     8.2       0.95   1
GerE            Bacterial regulatory proteins, luxR f     6.3          4   1
CARD            Caspase recruitment domain                4.5        8.3   1
Prothymosin     Prothymosin/parathymosin family           4.1        4.1   1
LexA_DNA_bind   LexA DNA binding domain                   3.8        5.5   1
Glyco_hydro_3_C Glycosyl hydrolase family 3 C termina     3.3        6.4   1
DUF615          Protein of unknown function (DUF615)      2.9        6.2   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
C2                1/3      21    96 ..     1    88 []    23.8    2e-05
Glyco_hydro_3_C   1/1     289   316 ..   256   285 .]     3.3      6.4
DAG_PE-bind       1/1     693   742 ..     1    51 []    86.8  4.5e-22
DUF615            1/1     755   791 ..   142   182 .]     2.9      6.2
Prothymosin       1/1     883   901 ..    94   111 .]     4.1      4.1
C2                2/3     817   908 ..     1    88 []   110.4  2.1e-30
CARD              1/1     989  1005 ..    74    90 .]     4.5      8.3
VPS9              1/1    1310  1325 ..   103   118 .]     8.2     0.95
GerE              1/1    1551  1562 ..     1    12 [.     6.3        4
LexA_DNA_bind     1/1    1551  1563 ..     1    13 [.     3.8      5.5
C2                3/3    1648  1738 ..     1    88 []    59.3  1.2e-15

Alignments of top-scoring domains:
C2: domain 1 of 3, from 21 to 96: score 23.8, E = 2e-05
                   *->LrVtvieAknLppkDkkngksDPYVkvslggdpkdqkkkTkvikktl
                      L +t+++A+   ++D  +   + YV+v+l      +k  T  ++++
    ZK524.2a    21    LCITIKKARLQGAVD-EF---NSYVTVKLQT----VKSTTVAVRGN- 58

                   NPvWNEtFtFevpppdlqetLeitVyDydrfgrddflGevs<-*
                    P W+++F Fe +  +++   +++++ ++ ++ d+++G  +
    ZK524.2a    59 LPCWEQEFIFE-TNRPDDG-MVLELWAKGVLW-DKLIGVHY    96

Glyco_hydro_3_C: domain 1 of 1, from 289 to 316: score 3.3, E = 6.4
                   *->dedgfpqddfYeegifvdYryFdkgnitpr<-*
                      d d+++q+ +Ye+ + +++r+F++    p+
    ZK524.2a   289    DQDQQHQN-IYED-TVTPVREFGESAVPPA    316

DAG_PE-bind: domain 1 of 1, from 693 to 742: score 86.8, E = 4.5e-22
                   *->HrFkrttfyksptfCdhCgellwglakQGlkCsnCglnvHkrChekV
                      H+F  ttf ++ptfC  C+ llwgla+QGl+C++C+++vH++C e++
    ZK524.2a   693    HNFATTTF-QTPTFCYECEGLLWGLARQGLRCTQCQVKVHDKCRELL 738

                   ptnC<-*
                    ++C
    ZK524.2a   739 SADC    742

DUF615: domain 1 of 1, from 755 to 791: score 2.9, E = 6.2
                   *->eADR.QkLRtLiRnAkKEkaqNKPPkafReiFQyLkelmetq<-*
                      eADR+Q L + iR   K ++qNKP     e+FQ+++++   +
    ZK524.2a   755    EADRtQSLVNVIRDRMKIQEQNKP-----EVFQMIRTVFDVD    791

Prothymosin: domain 1 of 1, from 883 to 901: score 4.1, E = 4.1
                   *->DEDdDvetK.KqKktDEDD<-*
                      DED+D   K +qK t E D
    ZK524.2a   883    DEDNDLKSKlRQKLTRESD    901

C2: domain 2 of 3, from 817 to 908: score 110.4, E = 2.1e-30
                   *->LrVtvieAknLppkDkkngksDPYVkvslggdpkdqkkkTkvikktl
                      +++tv++A++L +kD k+gksDPYV+ ++g+    +k++T++i+  l
    ZK524.2a   817    ITLTVLCAQGLIAKD-KTGKSDPYVTAQVGK----TKRRTRTIHQEL 858

                   NPvWNEtFtFevpppdlqetLeitVyDydrfgr...........ddflGe
                   NPvWNE+F+Fe ++++ ++ +++ V+D+d   +++ +++ ++++ddflG+
    ZK524.2a   859 NPVWNEKFHFE-CHNSTDR-IKVRVWDEDNDLKsklrqkltresDDFLGQ 906

                   vs<-*
                   ++
    ZK524.2a   907 TV    908

CARD: domain 1 of 1, from 989 to 1005: score 4.5, E = 8.3
                   *->aLretdqelladlllde<-*
                      +++et+qe ++++++++
    ZK524.2a   989    CFQETGQEIAEEFAMRY    1005

VPS9: domain 1 of 1, from 1310 to 1325: score 8.2, E = 0.95
                   *->LTsLeaAleFiktlde<-*
                      +T+L aAl+++k +d+
    ZK524.2a  1310    FTQLNAALKLLKQMDC    1325

GerE: domain 1 of 1, from 1551 to 1562: score 6.3, E = 4
                   *->ldsLspREreVL<-*
                       +sL+pR+++VL
    ZK524.2a  1551    EKSLTPRQCTVL    1562

LexA_DNA_bind: domain 1 of 1, from 1551 to 1563: score 3.8, E = 5.5
                   *->MkpLTeRQrevLd<-*
                       k LT+RQ +vLd
    ZK524.2a  1551    EKSLTPRQCTVLD    1563

	[output cut off at A = 10 top alignments]


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