Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5a/seq/ZK520.4b
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Query: ZK520.4b CE24730 locus:cul-2 Cullin family (2 domains) status:Partially_confirmed TR:O46021 protein_id:CAB07302.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Cullin Cullin family 1186.1 0 2
ribonuc_red_sm Ribonucleotide reductase, small chain 6.1 0.51 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
ribonuc_red_sm 1/1 429 459 .. 1 33 [. 6.1 0.51
Cullin 1/2 9 489 .. 1 550 [. 816.0 1.4e-241
Cullin 2/2 511 728 .] 605 850 .] 377.6 1.2e-109
Alignments of top-scoring domains:
ribonuc_red_sm: domain 1 of 1, from 429 to 459: score 6.1, E = 0.51
*->epmLfenpsrfvlYpiqhpdiwEelykkaisnf<-*
e++L +++++ + i+++di+ ++y+k ++n+
ZK520.4b 429 EAKL--DSAIVIFRYIEDKDIFQKFYSKMLANR 459
Cullin: domain 1 of 2, from 9 to 489: score 816.0, E = 1.4e-241
*->vdfeetWekLkpginqilrnekdmadTnvdvrksmtklsymeLYtnV
v+f+++W++L+p i +i++ ++++t+ ++++++++V
ZK520.4b 9 VEFDKVWVQLRPSIIDIIN------------LRPITNVQWHHKFSDV 43
YniclskslstslrgSpvrtggAdrlGekLYnrLkeyvVifaklikeyva
Y+ic+s++ ++l+e+LYn++k++ i+e+v+
ZK520.4b 44 YDICVSIP---------------TPLSERLYNEVKAC-------IQEHVR 71
alrkrvWislsndellLetyvkeWerftvsakiinniFkYLnrvwvkker
++r++ i + +++llL++y+k+W++f+++a++i+++F+YLn+++vk++r
ZK520.4b 72 QKRQD--IVDVDPDLLLQEYHKMWRVFHEGAIFIHRLFGYLNKQFVKQKR 119
sTdlDlfaqYaavdgkepiyeiytLaLdiWkevlfknFikdklidalLel
+TdlD+faqYaa+ + ++++ei++LaL+iWke+l+k+ i ++l++ lL+
ZK520.4b 120 CTDLDNFAQYAAFLQIPDVKEIGCLALEIWKEDLVKT-ILPQLVKLLLIA 168
ieleRkGniinrahlisgvveslveLgiddsDtdAke.....akkkklsv
i+++RkGn++++a+++sgv++s+v+++++d+D++++e+ + +a+++++++
ZK520.4b 169 IDNDRKGNFPHIANEVSGVINSFVKMEETDFDVVPAEgarykARESTTAF 218
YkesFEkpFLsaTeefYkkessnyLqelnsvteYmkkaekrLeeEseera
Y+esFEkp+L++Te++Y+ ++++L++l s++eYm+++ Le+E e+ra
ZK520.4b 219 YQESFEKPLLTDTEQYYSALAQKMLTDL-SCSEYMEQVIVLLEQE-EMRA 266
krYLhesRsntkkkLlevcenvLItshldtLhaefsggvkelidakkied
k+YLhes +++k+++ c++v+I+ h+d+Lha +++ li++++++d
ZK520.4b 267 KKYLHES---SVEKVITLCQKVMIKAHKDKLHAVCHD----LITNEENKD 309
LqrmYrLlrrvpnGeleelrksleeyikkeGlnaisnlaseagegkMkla
L++mYrLl++++ G l+ ++k++eey+kk+Gl+a+s+l+
ZK520.4b 310 LRNMYRLLKPIQAG-LSVMVKEFEEYVKKKGLEAVSRLT----------- 347
llsalatdPktyVqeLLevhkkfssLvntaFnsavdDagflqaLDkAfet
++ P+++V+++L+v++kf+++ + +F+ dD +f++ LDkA+++
ZK520.4b 348 ----GENVPQQFVENVLRVYNKFNDMKTAVFM---DDGEFSSGLDKALQG 390
FVNsnevsklappaksssksaELLAkYcDdLLkKsklsKkadetelEdkL
+VNs+e+ + s++k++E+LA+Y+D LLkKs +K+++et+lE+kL
ZK520.4b 391 VVNSKEPGQ------SVPKASERLARYTDGLLKKS--TKGLSETDLEAKL 432
devivvFkYiedKDVFekyYkkmLAKRLiletSaSdDaEemMisKLKqac
d++iv+F+YiedKD+F+k+Y+kmLA+RLi+ tS+S+DaEe Mi+KLKqac
ZK520.4b 433 DSAIVIFRYIEDKDIFQKFYSKMLANRLIASTSISMDAEELMINKLKQAC 482
GPyefTsK<-*
G yefTs+
ZK520.4b 483 G-YEFTSS 489
Cullin: domain 2 of 2, from 511 to 728: score 377.6, E = 1.2e-109
*->eisLPkeLedsleeFeeFYsskHnGRKLtWlhsLsrGevkanfnpgk
+++LP+ L+++++eFe+FY+ kHnGRKLtWl+++s+G+v+ ++++++
ZK520.4b 511 NFHLPRILQPVIQEFEKFYTGKHNGRKLTWLFNMSQGDVRLTYLDKQ 557
katYvLqvttfQmaiLLlFNdrlrdsitveeiqeltdaTeipedeLkrtl
Yv+q++++Qma LL+F++r d+i v++i e +++++ d+L +t+
ZK520.4b 558 ---YVAQMYVYQMAALLCFERR--DAILVKDIGE---EIGVSGDYLLKTI 599
qSLllikakvlvllkkskkedevKesereltpdtkFsvNenFssknKkvR
+++l+++ l++++++ lt+d+++++N+ + ++K+++
ZK520.4b 600 RTILDVTL----LTCDDQN----------LTADSLVRLNMSM--TSKRMK 633
vkinanlvqplqkeaeqEteevhetVeeDRklelqAaIVRIMKaRKkLkH
++++a+ q++ k e E+e+v +tV +DRk+++++aIVRIMK+RK+LkH
ZK520.4b 634 FRLQAP--QVN-KAVEKEQEAVANTVSQDRKYYMECAIVRIMKTRKVLKH 680
nqLvtEviqQlksRFkPsvsmIKkcIEsLIEKeYleRdeddkdtYeYLA<
n+LvtE+++Q+k+RF+P+v++IKk+IE+LIEK+Y++R+ d++d+Y+YLA
ZK520.4b 681 NALVTEIMDQTKGRFSPDVPFIKKSIEDLIEKMYIQRT-DQNDEYQYLA 728
-*
ZK520.4b - -