Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5a/seq/ZK484.2
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Query: ZK484.2 CE27353 locus:haf-9 transporter protein status:Confirmed TR:O44897 protein_id:AAK39394.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
ABC_tran ABC transporter 191.9 2e-54 1
ABC_membrane ABC transporter transmembrane region 174.7 1.5e-48 1
SLT_beta Shiga-like toxin beta subunit 4.0 6.3 1
IstB IstB-like ATP binding protein 3.9 4.7 1
Glyco_transf_10 Glycosyltransferase family 10 (fucosy 3.8 3.4 1
Ribosomal_S9 Ribosomal protein S9/S16 2.9 6.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Glyco_transf_10 1/1 22 47 .. 470 502 .] 3.8 3.4
ABC_membrane 1/1 205 477 .. 1 285 [] 174.7 1.5e-48
SLT_beta 1/1 514 524 .. 1 12 [. 4.0 6.3
IstB 1/1 547 564 .. 46 63 .. 3.9 4.7
Ribosomal_S9 1/1 579 600 .. 20 41 .. 2.9 6.8
ABC_tran 1/1 550 735 .. 1 199 [] 191.9 2e-54
Alignments of top-scoring domains:
Glyco_transf_10: domain 1 of 1, from 22 to 47: score 3.8, E = 3.4
*->egfCrvCrllqkapdllelSryktipnlakWFq<-*
+++++v l+++ + y t++n+a WF+
ZK484.2 22 DLLVNVFGLAWNGK-------YFTFDNIAHWFD 47
ABC_membrane: domain 1 of 1, from 205 to 477: score 174.7, E = 1.5e-48
*->lliailllilagatalvtfplllgrlldsgfplsdgnddharsslis
+ +a+++l+ + ++ +p+++g ++ +++ ++++ + + + ++
ZK484.2 205 YGMAFFFLFCYSLSRVF-IPYYTGEVVT-AVFGDKASYEKLHKTVFI 249
lailslfavfvliglllqgsfyllagerlgqrlrkrlfrallrqilglfd
+++l +a+ v+ gl ++++y + ++r++lfr++++q++g+fd
ZK484.2 250 MGML-SLASTVFGGLRGGSFTYA--HATIDRQIRNDLFRSVVKQEIGFFD 296
sffdtnsvGeltsRltnDvekirdglgeklgllfqslatvvgglivmfyy
n++Ge++sRl+ D+++++++l++ + +l+++l++++g li+mf++
ZK484.2 297 M----NKTGEICSRLSADCQTMSNTLSLYMNVLTRNLTMLFGSLIFMFTL 342
swkLtLillailpllillsavlakklrklsrkeqkayakagsvaeEslsg
swkL+ i+l+ +p+++l++++++ + ls++ q+++aka+ vaeE+ls
ZK484.2 343 SWKLSMITLINIPIIFLVNKIFGVWYDMLSEETQNSVAKANDVAEEVLSS 392
irTVkafgrEeyelerfdkaledaekagikkaiiagllfgitqlisylsy
irTVk+f+ E ye rf l+ k++ +k++++ l+ ++l+++ ++
ZK484.2 393 IRTVKSFACENYESSRFMTFLNVTLKIATRKVFVVIGLIWSNELLQMGIL 442
alalwfGgylvasvisgglsvgtlfaflslgnqligpl<-*
+++lw+Gg+l vi + +g l++fl++ ql l
ZK484.2 443 TIVLWYGGHL---VIENKVESGLLVSFLLYQFQLGENL 477
SLT_beta: domain 1 of 1, from 514 to 524: score 4.0, E = 6.3
*->AapDCvkGKvEy<-*
apD +GK+E+
ZK484.2 514 -APDGMTGKIEF 524
IstB: domain 1 of 1, from 547 to 564: score 3.9, E = 4.7
*->veraeNlvLlGPpGvGKT<-*
ve +e ++L+GP+G GK+
ZK484.2 547 VEPGEVVALVGPSGGGKS 564
Ribosomal_S9: domain 1 of 1, from 579 to 600: score 2.9, E = 6.8
*->GkIlvNgrpielyfpeelrrkv<-*
G++l++g p+++y+ + l++kv
ZK484.2 579 GEVLIDGVPVREYDHKFLHTKV 600
ABC_tran: domain 1 of 1, from 550 to 735: score 191.9, E = 2e-54
*->GevlalvGpNGaGKSTLLklisGllppteGtilldGardlsdlsklk
Gev+alvGp+G GKS+ + ++ ++++pt+G++l+dG +++ ++
ZK484.2 550 GEVVALVGPSGGGKSSCIAMLEHFYEPTSGEVLIDG-VPVREYD--- 592
erlerlrknigvvfQdptlfpnpeltvreniafglrlslglskdeqrdrl
+l ++++ v+Q+p+l+ +v eni +gl +++d +++ +
ZK484.2 593 --HKFLHTKVALVGQEPVLY---ARSVTENIGYGLDK---YDDDMVQNSA 634
kkagaeelLerlglgy...dhlldrrpgtLSGGqkQRvaiARaLltkpkl
k+a+a+ + ++ + ++ ++ ++++++++SGGqkQR+aiARaL+++p +
ZK484.2 635 KLANAHTF--IMNDTTdgyNTNVGEKGSQMSGGQKQRIAIARALVRQPVV 682
LlLDEPTagLDpasraqllellrelrqqggTvllitHdldlldrlaDril
LlLDE+T++LD++s+ ++e++ + + g+Tv+li H+l + aD+i+
ZK484.2 683 LLLDEATSALDAESEHTVQEAISKNLK-GKTVILIAHRLST-VENADKIV 730
vledG<-*
v+++G
ZK484.2 731 VINKG 735