Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/ZK418.8
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Query: ZK418.8 CE00810 possible RNA binding protein status:Partially_confirmed TR:Q23486 protein_id:AAA50692.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
KH KH domain 70.2 1.1e-18 2
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
KH 1/2 58 103 .. 1 49 [] 22.6 6.6e-05
KH 2/2 167 216 .. 1 49 [] 47.5 3.9e-12
Alignments of top-scoring domains:
KH: domain 1 of 2, from 58 to 103: score 22.6, E = 6.6e-05
*->evlvpasrvGliIGkgGsnIkeireetgakIdipddsegsverivti
+ +pa vG+++Gk+G ++++++ et++++ ++ + ++e+
ZK418.8 58 FIRIPAFAVGAVVGKRGMTLRRLMYETQTECVLRSY---TPEELDVA 101
tg<-*
+
ZK418.8 102 SN 103
KH: domain 2 of 2, from 167 to 216: score 47.5, E = 3.9e-12
*->evlvpasrvGliIGkgGsnIkeireetgakIdipddse.gsverivt
e++v +++vG+++G+gG+ Ik +r+++ ++I+i+d+++++++ vt
ZK418.8 167 EFEVETQMVGYLVGRGGRHIKTLRDKFSVNIQISDPIPdDPTRSLVT 213
itg<-*
++g
ZK418.8 214 VRG 216