Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/ZK131.5
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Query: ZK131.5 CE07075 locus:his-11 histone H2B status:Partially_confirmed TR:O02656
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
histone Core histone H2A/H2B/H3/H4 189.1 6.9e-53 1
CBFD_NFYB_HMF Histone-like transcription factor (CBF/ 12.9 0.13 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CBFD_NFYB_HMF 1/1 38 98 .. 6 67 .] 12.9 0.13
histone 1/1 8 122 .] 1 117 [] 189.1 6.9e-53
Alignments of top-scoring domains:
CBFD_NFYB_HMF: domain 1 of 1, from 38 to 98: score 12.9, E = 0.13
*->veRImKkaLPgaarvSkDAkellaecveEfisfiaseAveickhekR
+ R +K++ P + vS A ++ +v + + ia eA+++++ +kR
ZK131.5 38 IYRVLKQVHP-DTGVSSKAMSIMNSFVNDVFERIAAEASRLAHYNKR 83
KTikaEDIllAlesL<-*
Ti I+ A++
ZK131.5 84 STISSREIQTAVRLI 98
histone: domain 1 of 1, from 8 to 122: score 189.1, E = 6.9e-53
*->agkkgagkk.......kkrsrsrkaglqfyvgRvlkqlhpdtgissr
+g+k+a+k+ ++++++kkr ++rk+++++y++Rvlkq+hpdtg+ss+
ZK131.5 8 KGAKKAAKTvtkpkdgKKRRHARKESYSVYIYRVLKQVHPDTGVSSK 54
agaiansyvadvlErlaaEaleLagnakkdtKkkRitpreiqlAvrldle
a++i+ns+v+dv+Er+aaEa++La+++k++t i++reiq+Avrl+l+
ZK131.5 55 AMSIMNSFVNDVFERIAAEASRLAHYNKRST----ISSREIQTAVRLILP 100
lelakhAvtegtkaVtpniskrllgkk<-*
+elakhAv+egtkaVt+++s +k
ZK131.5 101 GELAKHAVSEGTKAVTKYTS-----SK 122