hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm5/seq/ZK1290.6
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Query:  ZK1290.6  CE29157    status:Partially_confirmed TR:Q09633 protein_id:AAB93313.2

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
rnaseH   RNase H                                        137.2      3e-37   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
rnaseH     1/1     293   428 ..     1   171 []   137.2    3e-37

Alignments of top-scoring domains:
rnaseH: domain 1 of 1, from 293 to 428: score 137.2, E = 3e-37
                   *->pea.vtvYTDGScsgnpgtggAGyGvlrdrggreeqfskplp...tT
                      p++++++YTDGS +++p t+g+G+  +++ g +e+++s+++ ++ +
    ZK1290.6   293    PKGtLVMYTDGSYLKRPPTSGIGI-FVGP-G-HELNRSQRIRgpiQD 336

                   NQrAEllAlieALekalKk..ysgliqkvnvIyTDSqYvftaHiggitei
                   N+ AE++A++ AL++alK+++y++  qkv+ I+TD+  v    i+ +++
    ZK1290.6   337 NNYAEFIAVRTALQNALKNenYRD--QKVV-IRTDCLNV----IE-ALQ- 377

                   wlhgWelkkngwptlkGseskpiknkfkeiwelllallkqkekpvyiqwV
                            +++pt + ++   +k+     + +   l+kq +k+v++q+V
    ZK1290.6   378 ---------GTRPT-A-FVD--VKS-----QVEF--LSKQFPKGVHFQHV 407

                   pGHqkGipgplaeqpqGNelADkLAkqgas<-*
                    +H +G+       p GNe+AD  A q++s
    ZK1290.6   408 YAH-AGD-------P-GNEMADLFAGQASS    428

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