Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/ZK1240.1
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Query: ZK1240.1 CE24717 status:Partially_confirmed TR:O16684 protein_id:AAB66140.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 30.9 4.1e-10 1
zf-B_box B-box zinc finger 12.5 0.22 2
NO_synthase Nitric oxide synthase, oxygenase domain 4.0 2.1 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
zf-C3HC4 1/1 40 84 .. 1 50 [] 30.9 4.1e-10
zf-B_box 1/2 76 90 .. 1 15 [. 0.4 3e+02
zf-B_box 2/2 121 168 .. 1 48 [] 13.7 0.11
NO_synthase 1/1 205 230 .. 1 26 [. 4.0 2.1
Alignments of top-scoring domains:
zf-C3HC4: domain 1 of 1, from 40 to 84: score 30.9, E = 4.1e-10
*->CrICleelkepsnd.fplilpCgHsGslkyfCrsClerWls.gnttv
C IC e++ ++d++p il CgHs +C+ C ++ l++ +
ZK1240.1 40 CEICNLEFSSVNEDqVPRILKCGHS-----VCQCCATKLLKnSAIS- 80
kCplC<-*
Cp+C
ZK1240.1 81 -CPFC 84
zf-B_box: domain 1 of 2, from 76 to 90: score 0.4, E = 3e+02
*->ekervCpeHgeplsl<-*
+++ Cp ++e+ s+
ZK1240.1 76 NSAISCPFCRETTSV 90
zf-B_box: domain 2 of 2, from 121 to 168: score 13.7, E = 0.11
*->ekervCpeHg.eplslfCed.....DqallCvvCdlsgeHsanklar
+ +++C H+ +++ C d++ ++D++l+C++C + g+H +
ZK1240.1 121 DVPPKCATHKyNMAEFVCLDpncssDEKLMCRTCEEFGVH------A 161
gHtvvpl<-*
gH +l
ZK1240.1 162 GHSKGLL 168
NO_synthase: domain 1 of 1, from 205 to 230: score 4.0, E = 2.1
*->deprpkeellqqAkdFinQYysSikr<-*
++ + ++++q+ kd i Yy+Si++
ZK1240.1 205 QTNQVDGKVFQDKKDLISVYYTSIRE 230