Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm5/seq/ZC581.7
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Query:  ZC581.7  CE28168   protein-tyrosine kinase status:Partially_confirmed TR:O01774 protein_id:AAB54145.2

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N
--------      -----------                               -----    ------- ---
pkinase       Protein kinase domain                     206.7    3.5e-58   1
SH2           SH2 domain                                 11.8     0.0078   1
Transposase_8 Transposase                                 4.9        5.4   1
SRP54_N       SRP54-type protein, helical bundle doma     4.9        7.8   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
SH2             1/1      16    38 ..     1    27 [.    11.8   0.0078
Transposase_8   1/1      91   112 ..    72    93 .]     4.9      5.4
SRP54_N         1/1     135   169 ..     1    35 [.     4.9      7.8
pkinase         1/1     120   369 ..     1   290 [.   206.7  3.5e-58

Alignments of top-scoring domains:
SH2: domain 1 of 1, from 16 to 38: score 11.8, E = 0.0078
                   *->WyhGkIsRkeAErlLlnpggkdGtFLv<-*
                      +yhG++  ++A +lL n    dG++++
     ZC581.7    16    YYHGALMNQDADQLLVN----DGDYMI    38

Transposase_8: domain 1 of 1, from 91 to 112: score 4.9, E = 5.4
                   *->rkelarlklEneiLKkaaakka<-*
                      +ke ++ k E+ iLK+a++k
     ZC581.7    91    QKETMEIKGERVILKRAIPKGK    112

SRP54_N: domain 1 of 1, from 135 to 169: score 4.9, E = 7.8
                   *->vlqgLskslnkalnklrglskideelieevleEie<-*
                      +l +L+k+ +k++ k    ++ dee + e+++E +
     ZC581.7   135    YLGRLTKNNTKIAVKKLDTEGNDEESLAEMMKEAR    169

pkinase: domain 1 of 1, from 120 to 369: score 206.7, E = 3.5e-58
                   *->yelleklGeGsfGkVykakhkdktgkiVAvKilkk...ekesikekr
                        +++klG+G++G+Vy++++  k++ + AvK+l+ +++++es+ e
     ZC581.7   120    VDFKKKLGSGAYGTVYLGRLT-KNNTKIAVKKLDTegnDEESLAE-- 163

                   flrEiqilkrLsHpNIvrligvfedtddhlylvmEymegGdLfdylrrng
                   +  E+++++  +HpNIv+++g+   +d ++ lv+E+++gG+  d l+++g
     ZC581.7   164 MMKEARVMQLYDHPNIVKFYGYIV-DDIPYLLVLELCNGGSVEDKLVEKG 212

                   gplsekeakkialQilrGleYLHsngivHRDLKpeNILldendgtvKiaD
                    +ls k  +++++  ++G+eYLH ++++HRD++++N+L++++   vKiaD
     ZC581.7   213 AKLSTKTRIMYTYHAACGIEYLHKKKCIHRDIAARNCLIHKE--IVKIAD 260

                   FGLArllesssklttfvGTpwYmmAPEvileg...rgysskvDvWSlGvi
                   FG++r  +  +k + +  T ++++APEv   ++++r+ +   D+ ++ ++
     ZC581.7   261 FGMCRATS-IYKVDLNKPTNTRWLAPEV-WDNgetRDNT---DIFAFAIT 305

                   LyElltggplfpgadlpaftggdevdqliifvlklPfsdelpktridple
                   ++E +                            + P++      + + ++
     ZC581.7   306 MWEFF----------------------------EVPYDS-----PYSEWK 322

                   elfriikrp.glrlplpsncSeelkdLlkkcLnkDPskRpGsatakeiln
                    ++  +k++ g+rlp p+  + +  +++k c+++DP++Rp   ta e+ +
     ZC581.7   323 GYMVKQKTRaGYRLPTPKGMPWDIEEIMKLCWHVDPNQRP---TASELRE 369

                   <-*

     ZC581.7     -     -



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