Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/ZC518.2
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Query: ZC518.2 CE24707 locus:sec-24.2 Yeast YIK9 like status:Partially_confirmed TR:Q23368 protein_id:CAA92988.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Sec23_trunk Sec23/Sec24 trunk domain 356.8 2.3e-103 1
Sec23_helical Sec23/Sec24 helical domain 134.5 1.7e-39 1
zf-Sec23_Sec24 Sec23/Sec24 zinc finger 66.3 9.9e-17 1
Gelsolin Gelsolin repeat 40.9 1e-10 1
DIT1_PvcA Pyoverdine/dityrosine biosynthesis pro 3.2 4.8 1
DUF159 Uncharacterized ACR, COG2135 1.1 3.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
zf-Sec23_Sec24 1/1 329 367 .. 1 42 [] 66.3 9.9e-17
DUF159 1/1 365 385 .. 243 263 .] 1.1 3.9
Sec23_trunk 1/1 403 682 .. 1 280 [] 356.8 2.3e-103
Sec23_helical 1/1 778 881 .. 1 108 [] 134.5 1.7e-39
DIT1_PvcA 1/1 908 921 .. 305 318 .] 3.2 4.8
Gelsolin 1/1 896 969 .. 1 96 [] 40.9 1e-10
Alignments of top-scoring domains:
zf-Sec23_Sec24: domain 1 of 1, from 329 to 367: score 66.3, E = 9.9e-17
*->dPvRCskrrCrAYlNPfcqfddrarrWqCnfCgsrNdvPpeY<-*
++vRC r Cr+Y+NP++++ d+ r+W+Cn+C++ Nd+P+++
ZC518.2 329 NIVRC--RYCRTYINPYVYLPDH-RHWKCNLCNRNNDLPDDF 367
DUF159: domain 1 of 1, from 365 to 385: score 1.1, E = 3.9
*->sdlelyQVSrlVgnvkNngpe<-*
+d+ + +V+++ g ++N+ +
ZC518.2 365 DDFCWDPVTKAFGDPRNRPEI 385
Sec23_trunk: domain 1 of 1, from 403 to 682: score 356.8, E = 2.3e-103
*->PqPpvfvFviDVSyeAikeGlLqalkesLlqsLdlLPngdpralVGl
PqP+v+vFviD+S Ai++G+L++++e+Ll+++d++P gd+r +V++
ZC518.2 403 PQPAVYVFVIDISAAAIQSGYLHTFAEQLLINIDQMP-GDDRSQVCF 448
ITfDstvhfynlssslcsksyVfrgpkmltvsdlqdvfGLgksaqrpsga
I +D+++hf+++ss+ r+p++++v+d++d f
ZC518.2 449 IAVDQCLHFFSFSSNK-------RYPNEMIVDDIDDAF------------ 479
gkllPlpadrfLvPlseckfvledLLeeLppdmfpvtaghrperalGpAL
lP++ +++LvP+++ k+++++++++Lp+ ++++ ++ ++ ++lG+AL
ZC518.2 480 ---LPSV-TSLLVPMKKFKDTIRTFIKQLPE-FYSQIGPTSNGNCLGSAL 524
qaAfgLLegcfpntGgnGRImvFqsgLPTvGpGGkLksrldePiRshhdi
+ A ++++ + +G GRI++Fq +LP++G+ G+Lksr++
ZC518.2 525 KLAQSMIQ--E--VG--GRISIFQVSLPNLGL-GALKSREES-------- 559
dkdkakllkkadkFYkkLAkecvksghvVDlFafsldyvDvAelkv....
+++ ++l +++d FYk+L +ec++s++++DlF+f+++y D+A+l+ +
ZC518.2 560 TEGGQNLGPATD-FYKALSLECTGSQICLDLFMFNTQYADLATLCRffwr 608
....................................laklTGGqvvlyds
+ ++ ++++ ++ +++ +++ ++ +++++ak++ G+v+++++
ZC518.2 609 ipfidsvyqktsantvfilipgklkkkikqlinrteIAKFSTGCVYHFPN 658
Fnat.adnDtskFkqdLqRyftrd<-*
+n++++ +++++F ++L+Ry+tr+
ZC518.2 659 YNYRnDIHQVKRFERTLTRYLTRK 682
Sec23_helical: domain 1 of 1, from 778 to 881: score 134.5, E = 1.7e-39
*->qeAaavlmaklAvekaltesslkdaRdwldnalidilaaYrkncask
++A ++++ak+ ve+++t+ssl d R++l+na++d+ aY+k+ +
ZC518.2 778 LKATVSYLAKIGVERSMTGSSLADSREALVNAVVDSVGAYQKA---V 821
nspsqliLpecasLkLLPlymlaLlKspaLrvgetnnspDeRayarnlls
+ +s++ +p++++L+L+P y+la+lK+pa++++ +++++DeRa a+++++
ZC518.2 822 SRGSGMLVPRVGHLRLFPSYVLAMLKHPAFSSS-RGIRLDERAGAMLMMR 870
slpldqllkmi<-*
pldq+l+ i
ZC518.2 871 FSPLDQILSDI 881
DIT1_PvcA: domain 1 of 1, from 908 to 921: score 3.2, E = 4.8
*->evlkragelvqvdg<-*
e++ r+g+ ++++g
ZC518.2 908 EHISRGGVYLMITG 921
Gelsolin: domain 1 of 1, from 896 to 969: score 40.9, E = 1e-10
*->nfvlpppvplsqeslnsgdcyLLDngtkgglnyiiflWvGkkssqWR
+ + pp++pls+e++++g++yL+ +gt i f++v s++
ZC518.2 896 EDQSPPALPLSFEHISRGGVYLMITGT------IAFVYVA-SSAD-- 933
KagYhdPdeklaaallavelddaaqikqdrfplpevvrvvqgkeparFl<
+ +l +++++ ++d+++ + + ++ ++ + +++ ++F
ZC518.2 934 -------PGFLVNVFGTSTYNDIDEYS--LLER---DN-ELSRRVHAFF 969
-*
ZC518.2 - -