Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm5/seq/ZC434.2
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Query:  ZC434.2  CE06577  locus:rps-7 40S ribosomal protein S7 status:Confirmed TR:Q23312 protein_id:CAB00058.1

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N
--------      -----------                               -----    ------- ---
Ribosomal_S7e Ribosomal protein S7e                     334.8    9.9e-97   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
Ribosomal_S7e   1/1       4   194 .]     1   192 []   334.8  9.9e-97

Alignments of top-scoring domains:
Ribosomal_S7e: domain 1 of 1, from 4 to 194: score 334.8, E = 9.9e-97
                   *->asaKIvKagseePdefelqiaQAlleLEmnSkdLkaeLReLqitsar
                      +  K +K  ++   e+e q++QAl++LE+n  d + +L eL+i  ++
     ZC434.2     4    IIGKLLKSDGKVVSEIEKQVSQALIDLETND-DVQSQLKELYIVGVK 49

                   EievgGgkKAiiifVPvPklkaFqKvQtrLvRELEKKFsdkHVvFiAeRr
                   E+e+g +k Aiii+VPvP+lkaF+K+   LvRELEKKF ++ +  +A Rr
     ZC434.2    50 EVELG-NKSAIIIYVPVPQLKAFHKIHPALVRELEKKFGGRDILILAKRR 98

                   ILPKPsr..ksRsknkQKRPRSRtLTaVhdaILEDLVFPtEIVGKRiRvk
                   ILPKP r++k R ++kQKRPRSRtLTaVhda L  LV+P+E+VG+RiRvk
     ZC434.2    99 ILPKPQRgsKAR-PQKQKRPRSRTLTAVHDAWLDELVYPAEVVGRRIRVK 147

                   lDGskliKVhLDkkdqntieyKvetFssVYkKLTGkdVtFEfPeetl<-*
                   lDG+k+ KVhLDk  q+++ +K++ F+sVY+KLTGkdVtFEfP +
     ZC434.2   148 LDGKKVYKVHLDKSHQTNVGHKIGVFASVYRKLTGKDVTFEFPDPIF    194



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