Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/ZC308.1
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Query: ZC308.1 CE15159 status:Partially_confirmed TR:O17088 protein_id:AAB70341.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
PAP_assoc PAP/25A associated domain 48.5 1.4e-12 2
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
PAP_assoc 1/2 538 566 .. 1 30 [. 41.0 2e-10
PAP_assoc 2/2 625 639 .. 53 67 .] 7.3 1.1
Alignments of top-scoring domains:
PAP_assoc: domain 1 of 2, from 538 to 566: score 41.0, E = 2e-10
*->sLGvLLigFFeyYgrreFdyedfvIsirtG<-*
+LG+LLigF++yY++ eF+y+ +Isir+G
ZC308.1 538 TLGELLIGFLDYYAN-EFNYDRDAISIRQG 566
PAP_assoc: domain 2 of 2, from 625 to 639: score 7.3, E = 1.1
*->qpspLcIeDPfdtsn<-*
q+ cIe+Pf+ sn
ZC308.1 625 QWRCVCIEEPFTNSN 639