Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm5/seq/ZC168.5
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Query:  ZC168.5  CE06571    status:Confirmed TR:Q23248 protein_id:CAA94385.1

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N
--------    -----------                                 -----    ------- ---
DUF398      Domain of unknown function (DUF398)          79.2    4.1e-20   1
Baculo_gp64 Baculovirus gp64 envelope glycoprotein fa     7.7       0.15   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
Baculo_gp64   1/1       1    22 [.     1    22 [.     7.7     0.15
DUF398        1/1      96   171 ..     1    86 []    79.2  4.1e-20

Alignments of top-scoring domains:
Baculo_gp64: domain 1 of 1, from 1 to 22: score 7.7, E = 0.15
                   *->MvrstvlllLlvglaeptqqaE<-*
                      Mv s+vl++L++ ++++++  E
     ZC168.5     1    MVHSSVLIVLSLTASSSAFLLE    22

DUF398: domain 1 of 1, from 96 to 171: score 79.2, E = 4.1e-20
                   *->sddnkCndeeLrkimeenideakaspdfgpddlseskraIqkaaeke
                      s d +Cn++e r+i++++++          + + es++ I+++ ++e
     ZC168.5    96    SGDLFCNSVEVRDIIKKGMT----------SGEKESRETITALLKTE 132

                   FggsFeVICsegdFsyvtntdgdlyCkv.ekdgvtClafk<-*
                   +++ + VIC++++F y++++d+ ++C+v+   g+tC  f+
     ZC168.5   133 MNREYVVICTKQPFEYLASSDS-EFCSVtNDSGITCSSFV    171



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