Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/ZC168.5
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: ZC168.5 CE06571 status:Confirmed TR:Q23248 protein_id:CAA94385.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
DUF398 Domain of unknown function (DUF398) 79.2 4.1e-20 1
Baculo_gp64 Baculovirus gp64 envelope glycoprotein fa 7.7 0.15 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Baculo_gp64 1/1 1 22 [. 1 22 [. 7.7 0.15
DUF398 1/1 96 171 .. 1 86 [] 79.2 4.1e-20
Alignments of top-scoring domains:
Baculo_gp64: domain 1 of 1, from 1 to 22: score 7.7, E = 0.15
*->MvrstvlllLlvglaeptqqaE<-*
Mv s+vl++L++ ++++++ E
ZC168.5 1 MVHSSVLIVLSLTASSSAFLLE 22
DUF398: domain 1 of 1, from 96 to 171: score 79.2, E = 4.1e-20
*->sddnkCndeeLrkimeenideakaspdfgpddlseskraIqkaaeke
s d +Cn++e r+i++++++ + + es++ I+++ ++e
ZC168.5 96 SGDLFCNSVEVRDIIKKGMT----------SGEKESRETITALLKTE 132
FggsFeVICsegdFsyvtntdgdlyCkv.ekdgvtClafk<-*
+++ + VIC++++F y++++d+ ++C+v+ g+tC f+
ZC168.5 133 MNREYVVICTKQPFEYLASSDS-EFCSVtNDSGITCSSFV 171