Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y79H2A.6
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Query: Y79H2A.6 CE24672 status:Confirmed TR:Q9U1R7 protein_id:CAB54510.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
WD40 WD domain, G-beta repeat 67.0 3e-17 6
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
WD40 1/6 4 42 .. 1 39 [] 12.2 0.11
WD40 2/6 48 86 .. 1 39 [] 27.6 4.9e-06
WD40 3/6 92 128 .. 1 37 [. 0.7 2.1e+02
WD40 4/6 138 176 .. 1 39 [] 25.0 2.6e-05
WD40 5/6 198 235 .. 1 39 [] 14.1 0.033
WD40 6/6 349 360 .. 28 39 .] 4.8 15
Alignments of top-scoring domains:
WD40: domain 1 of 6, from 4 to 42: score 12.2, E = 0.11
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
g ++ + + +p+tc a++ d ++++a + + + i++++
Y79H2A.6 4 GVPVLHWnFGIGPITCHAWNKD-RTQIAVSASSNDIHIFE 42
WD40: domain 2 of 6, from 48 to 86: score 27.6, E = 4.9e-06
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
++ ++tl+ H pvt +++ ++++s+S D++ +W
Y79H2A.6 48 WQSIHTLsEHDLPVTGLDWGTK-TNRIVSCSQDKNAFVWT 86
WD40: domain 3 of 6, from 92 to 128: score 0.7, E = 2.1e+02
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtikl<-*
+++ +l + + t v++sp + +a gS + + +
Y79H2A.6 92 WKPELVLvRFNRAATYVKWSPL-ENKFAVGSGAKLVSV 128
WD40: domain 4 of 6, from 138 to 176: score 25.0, E = 2.6e-05
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
+ +++ + s+vtc++++ + +la gS+D ++++++
Y79H2A.6 138 WVSKQIKkPIRSTVTCLDWHSN-NVLLAVGSCDFKCRVFS 176
WD40: domain 5 of 6, from 198 to 235: score 14.1, E = 0.033
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
g++ ++++ ++v vafsp+ g++la S+D ++ d
Y79H2A.6 198 GQLMSEYsVG-GWVHRVAFSPS-GCRLAFVSHDSSVSFVD 235
WD40: domain 6 of 6, from 349 to 360: score 4.8, E = 15
*->sgSrDgtiklWd<-*
+++ Dg + lWd
Y79H2A.6 349 TCGTDGIVALWD 360