Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm5/seq/Y79H2A.6
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Query:  Y79H2A.6  CE24672    status:Confirmed TR:Q9U1R7 protein_id:CAB54510.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
WD40     WD domain, G-beta repeat                        67.0      3e-17   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WD40       1/6       4    42 ..     1    39 []    12.2     0.11
WD40       2/6      48    86 ..     1    39 []    27.6  4.9e-06
WD40       3/6      92   128 ..     1    37 [.     0.7  2.1e+02
WD40       4/6     138   176 ..     1    39 []    25.0  2.6e-05
WD40       5/6     198   235 ..     1    39 []    14.1    0.033
WD40       6/6     349   360 ..    28    39 .]     4.8       15

Alignments of top-scoring domains:
WD40: domain 1 of 6, from 4 to 42: score 12.2, E = 0.11
                   *->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
                      g ++ + +   +p+tc a++ d ++++a + + + i++++
    Y79H2A.6     4    GVPVLHWnFGIGPITCHAWNKD-RTQIAVSASSNDIHIFE    42

WD40: domain 2 of 6, from 48 to 86: score 27.6, E = 4.9e-06
                   *->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
                      ++ ++tl+ H  pvt +++     ++++s+S D++  +W
    Y79H2A.6    48    WQSIHTLsEHDLPVTGLDWGTK-TNRIVSCSQDKNAFVWT    86

WD40: domain 3 of 6, from 92 to 128: score 0.7, E = 2.1e+02
                   *->geclatl.gHtspvtcvafspdsgpylasgSrDgtikl<-*
                      +++  +l   + + t v++sp   + +a gS  + + +
    Y79H2A.6    92    WKPELVLvRFNRAATYVKWSPL-ENKFAVGSGAKLVSV    128

WD40: domain 4 of 6, from 138 to 176: score 25.0, E = 2.6e-05
                   *->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
                      +  +++ +   s+vtc++++ +   +la gS+D ++++++
    Y79H2A.6   138    WVSKQIKkPIRSTVTCLDWHSN-NVLLAVGSCDFKCRVFS    176

WD40: domain 5 of 6, from 198 to 235: score 14.1, E = 0.033
                   *->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
                      g++ ++++   ++v  vafsp+ g++la  S+D ++   d
    Y79H2A.6   198    GQLMSEYsVG-GWVHRVAFSPS-GCRLAFVSHDSSVSFVD    235

WD40: domain 6 of 6, from 349 to 360: score 4.8, E = 15
                   *->sgSrDgtiklWd<-*
                      +++ Dg + lWd
    Y79H2A.6   349    TCGTDGIVALWD    360



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