Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y77E11A.15
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Query: Y77E11A.15 CE26306 status:Confirmed TN:AAM97984 protein_id:AAM97984.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Collagen Collagen triple helix repeat (20 copie 97.2 3.1e-25 3
Col_cuticle_N Nematode cuticle collagen N-terminal d 38.7 4.2e-10 1
invertase_neut Plant neutral invertase 2.5 4.1 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
invertase_neut 1/1 39 58 .. 1 20 [. 2.5 4.1
Col_cuticle_N 1/1 12 78 .. 1 66 [] 38.7 4.2e-10
Collagen 1/3 93 124 .. 29 60 .] 20.8 0.00032
Collagen 2/3 144 203 .. 1 60 [] 51.3 1.3e-12
Collagen 3/3 210 269 .. 1 60 [] 40.8 9.7e-10
Alignments of top-scoring domains:
invertase_neut: domain 1 of 1, from 39 to 58: score 2.5, E = 4.1
*->kksleaqeiedeAWrLlLrk<-*
++s+ + e+ d+AW lLrk
Y77E11A.15 39 EESRTTREVADDAWEELLRK 58
Col_cuticle_N: domain 1 of 1, from 12 to 78: score 38.7, E = 4.2e-10
*->SgvAvlacLftvpsiyndInsfqdevmdemdeFKvyaddaWneMvdv
++v +++L t+ i++dIn ++ +vm+e + + +addaW+e++ +
Y77E11A.15 12 ATVLTIGSLATMCLIVSDINGLYNDVMEESRTTREVADDAWEELLRK 58
q.rnvrppskpasarfgrpf<-*
+++++ ++ + + +fgr++
Y77E11A.15 59 NgAPEASRAAVTAMLFGRNK 78
Collagen: domain 1 of 3, from 93 to 124: score 20.8, E = 0.00032
*->ppGppGepGpPGppGppGppGppGapGapGpp<-*
p+GppG++Gp G+pG +Gp G +G++G pG +
Y77E11A.15 93 PAGPPGPRGPNGAPGLDGPDGLDGPDGHPGYA 124
Collagen: domain 2 of 3, from 144 to 203: score 51.3, E = 1.3e-12
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
GppGp G +G+pG +G+pG+ G++GapG+pG pGe Gp+G++G+pG
Y77E11A.15 144 GPPGPDGCAGEPGTDGAPGEDGQNGAPGSPGGPGETGPQGHQGKPGR 190
pGppGapGapGpp<-*
+Gp+G+pGa+G+
Y77E11A.15 191 AGPRGPPGAKGQT 203
Collagen: domain 3 of 3, from 210 to 269: score 40.8, E = 9.7e-10
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G pG G++GppGppG+ G G +Ga G pG+ G+pG+ G pG++G+
Y77E11A.15 210 GHPGNSGRRGPPGPPGANGKNGKQGADGIPGAGGAPGQHGVPGVDGS 256
pGppGapGapGpp<-*
G pG++ apG
Y77E11A.15 257 DGAPGEDAAPGGD 269