Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y75B8A.9
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Query: Y75B8A.9 CE23021 Glycosyl transferases status:Partially_confirmed TR:Q9XW72 protein_id:CAA22098.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Glycos_transf_2 Glycosyl transferase 89.3 5.9e-25 1
Ricin_B_lectin QXW lectin repeat 17.4 0.0079 2
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Glycos_transf_2 1/1 162 347 .. 1 149 [] 89.3 5.9e-25
Ricin_B_lectin 1/2 484 529 .. 1 44 [] 13.3 0.099
Ricin_B_lectin 2/2 530 567 .. 1 44 [] 4.2 25
Alignments of top-scoring domains:
Glycos_transf_2: domain 1 of 1, from 162 to 347: score 89.3, E = 5.9e-25
*->SiiiPtYNe.ekyleecleSllnQt.tyenfEiivVDDgS..tDgtv
Si+++ +Ne++++l ++++S+ + t++ Ei++VDD S+ + t
Y75B8A.9 162 SIVVCYFNEsPSVLIRMVNSIFDRTkPEHLHEILLVDDSSewSNATD 208
eileeyak....dprirvirleenlGlaaArNaGlkhAtGdydyiaflDa
e ++ k+ + +++ + ++n+Gl++A +G+++A+G+ +++flD+
Y75B8A.9 209 EAIKYREKhiiqWEKVKFLKTDKNEGLIRAKIFGARRANGE--VLVFLDS 256
Ddev.pdwlekllellekngadivig.rv.in.e.n.kgr..........
++ev+++wl++ll+ +++n+ +v++ ++ i+ + ++ ++ +++ +
Y75B8A.9 257 HCEVnEEWLPPLLDQIKQNRRRVVCPiIDiIDaItMkYVEspvctggvnw 306
........lngk.l.r.l.l.v.fli.snalyrrealekll<-*
+ + + ++ +++ ++ ++ ++++a++ + + ++++
Y75B8A.9 307 amtfkwdyPHRSyFeDpMnYvNpLKSpTMAGGLFAIDKEYF 347
Ricin_B_lectin: domain 1 of 2, from 484 to 529: score 13.3, E = 0.099
*->gtIrnlksglCLDvagg..stadGtpvqlytChgndgnQkWtlekd<
+ I+ ++ CL + ++++ a+G++v + +C+ Q+W++++
Y75B8A.9 484 YLIKMANGTHCLSAENSqgRIANGNRVEMRKCNHMERMQQWKYSST 529
-*
Y75B8A.9 - -
Ricin_B_lectin: domain 2 of 2, from 530 to 567: score 4.2, E = 25
*->gtIrnlks.glCLDvaggstadGtpvqlytChgndgnQkWtlekd<-
++r+ +s+ +CLD + +++ Ch+++ Q W +++
Y75B8A.9 530 NELRPMGSsRMCLDSLR------G-ISVILCHNQGAHQMWQVSNA 567
*
Y75B8A.9 - -