Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm5/seq/Y75B12B.2
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Query:  Y75B12B.2  CE20371  locus:cyp-7 Peptidyl-prolyl cis-trans isomerases status:Confirmed SW:P52015 protein_id:CAA21760.1

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N
--------      -----------                               -----    ------- ---
pro_isomerase Cyclophilin type peptidyl-prolyl cis-tr   376.1   3.6e-109   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
pro_isomerase   1/1       5   171 .]     1   179 [.   376.1 3.6e-109

Alignments of top-scoring domains:
pro_isomerase: domain 1 of 1, from 5 to 171: score 376.1, E = 3.6e-109
                   *->kvyFDitiggkplGrIvfeLfgdvvPkTaeNFraLctgekgfg...k
                      +v+FDiti gkp GrIv+eL++d vPkTaeNFraLctgekg+g+++k
   Y75B12B.2     5    RVFFDITIAGKPTGRIVMELYNDIVPKTAENFRALCTGEKGVGksgK 51

                   klfYkGstFHRVIpnFMiQGGDftagnqGtGGkSIYGekFkDEnfnlkHd
                   +l++kGs+FHR+Ip FMiQGGDft+gn GtGG+SIYGekF+DEnf+ kH+
   Y75B12B.2    52 PLHFKGSKFHRIIPEFMIQGGDFTRGN-GTGGESIYGEKFPDENFKEKHT 100

                   rhepGtLSMANaGdpnTNGSQFFItTvktpwLDGKHVvdfGYAVFGkVve
                   +  pG+LSMANaG pnTNGSQFF +Tvkt+wLDGKHV      VFG Vve
   Y75B12B.2   101 G--PGVLSMANAG-PNTNGSQFFLCTVKTAWLDGKHV------VFGRVVE 141

                   GmdVVkkIenvgtdeyGksgdkpskeVkIadcgql<-*
                   G+d+V k+e  g++    sg  p++e+ Iadcgql
   Y75B12B.2   142 GLDIVSKVEGNGSS----SG-TPKSECLIADCGQL    171



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