Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y74C10AR.1
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Query: Y74C10AR.1 CE30325 status:Partially_confirmed TR:Q965S8 protein_id:AAK68601.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
WD40 WD domain, G-beta repeat 92.7 1.4e-24 5
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
WD40 1/5 5 38 .. 6 39 .] 8.6 1.2
WD40 2/5 42 80 .. 1 39 [] 34.6 4.9e-08
WD40 3/5 189 218 .. 9 39 .] 12.3 0.11
WD40 4/5 222 253 .. 1 32 [. 0.4 2.6e+02
WD40 5/5 277 315 .. 1 39 [] 35.4 2.9e-08
Alignments of top-scoring domains:
WD40: domain 1 of 5, from 5 to 38: score 8.6, E = 1.2
*->tl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
+l+gH+ + t v+f+ + g + +s+ D++ ++W
Y74C10AR.1 5 SLkGHERALTRVRFNRE-GDLTFSCAKDKKPCVWY 38
WD40: domain 2 of 5, from 42 to 80: score 34.6, E = 4.9e-08
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
ge + +++gH+++v+++++s d + ++++S D t+k+Wd
Y74C10AR.1 42 GERIGSYdGHNGAVWDIDVSWD-TTKCVTASGDLTVKIWD 80
WD40: domain 3 of 5, from 189 to 218: score 12.3, E = 0.11
*->HtspvtcvafspdsgpylasgSrDgtiklWd<-*
H +v ++ sp g +l+s+SrD+t l d
Y74C10AR.1 189 HRYSVQDLQLSPR-GDFLISASRDKTAALLD 218
WD40: domain 4 of 5, from 222 to 253: score 0.4, E = 2.6e+02
*->geclatl.gHtspvtcvafspdsgpylasgSrD<-*
+ l+ ++ pv++ ++sp+ ++++ g++D
Y74C10AR.1 222 LKKLKQYkSE-RPVNSACISPNRDHICLGGGED 253
WD40: domain 5 of 5, from 277 to 315: score 35.4, E = 2.9e-08
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
e a ++gH +p++ +a++p+ g+++a+g++Dg i++ +
Y74C10AR.1 277 EEEFARFkGHFGPINTMAWHPS-GTIIATGGEDGYIRIQE 315