Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y73F4A.2
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Query: Y73F4A.2 CE20368 status:Confirmed TR:Q9XWC3 protein_id:CAA21754.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
DOMON DOMON domain 83.3 4.1e-21 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DOMON 1/1 26 142 .. 1 128 [] 83.3 4.1e-21
Alignments of top-scoring domains:
DOMON: domain 1 of 1, from 26 to 142: score 83.3, E = 4.1e-21
*->cdyevsWnvdgdkiqiefeltvktntnrytalGFSGdddgqMnnaDv
d+ev W++ +++i ++f++t ++n n +t++GF+ d ++n + v
Y73F4A.2 26 SDFEVYWRFANNSINMQFMNTDIKN-NEWTGVGFG---DDKNNFVGV 68
ivcwvdgngrvtvkDsyiqtpgksppveDeviGddqqdvtll..dgried
++++ n++vtv+++ t++++pp++++ +G+++ +v+ + +++ ed
Y73F4A.2 69 FFMVS--NNQVTVRTGS--TTQHGPPTFTQ-SGTNTASVSTQalNYFPED 113
GvltckfrRklvtndpkrdfsldpgtyhvlwaa<-*
+++++++ ++++n+ sl+ ++++ ++ +
Y73F4A.2 114 KTMSAVVQIPIQFNG----RSLQSCQKWRFVKS 142