Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm5/seq/Y73F4A.2
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Query:  Y73F4A.2  CE20368    status:Confirmed TR:Q9XWC3 protein_id:CAA21754.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
DOMON    DOMON domain                                    83.3    4.1e-21   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
DOMON      1/1      26   142 ..     1   128 []    83.3  4.1e-21

Alignments of top-scoring domains:
DOMON: domain 1 of 1, from 26 to 142: score 83.3, E = 4.1e-21
                   *->cdyevsWnvdgdkiqiefeltvktntnrytalGFSGdddgqMnnaDv
                       d+ev W++ +++i ++f++t ++n n +t++GF+   d ++n + v
    Y73F4A.2    26    SDFEVYWRFANNSINMQFMNTDIKN-NEWTGVGFG---DDKNNFVGV 68

                   ivcwvdgngrvtvkDsyiqtpgksppveDeviGddqqdvtll..dgried
                    ++++  n++vtv+++   t++++pp++++ +G+++ +v+ +  +++ ed
    Y73F4A.2    69 FFMVS--NNQVTVRTGS--TTQHGPPTFTQ-SGTNTASVSTQalNYFPED 113

                   GvltckfrRklvtndpkrdfsldpgtyhvlwaa<-*
                    +++++++ ++++n+     sl+ ++++ ++ +
    Y73F4A.2   114 KTMSAVVQIPIQFNG----RSLQSCQKWRFVKS    142



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