Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y73B6BL.6
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Query: Y73B6BL.6 CE29008 status:Partially_confirmed TN:AAM44397 protein_id:AAM44397.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
rrm RNA recognition motif. (a.k.a. RRM, RBD, or 157.9 5.1e-45 2
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
rrm 1/2 31 101 .. 1 77 [] 77.4 2.6e-21
rrm 2/2 112 182 .. 1 77 [] 80.8 2.4e-22
Alignments of top-scoring domains:
rrm: domain 1 of 2, from 31 to 101: score 77.4, E = 2.6e-21
*->lfVgNLppdvteedLkdlFskfGpivsikivkDhiekpketgkskGf
+fVg+++p+v+ edL +F ++G++ +++++D + +g+s+Gf
Y73B6BL.6 31 IFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYD-----RTNGRSRGF 72
aFVeFeseedAekAlealnGkelggrklrv<-*
aFVeF++ e+ + Al+ +++++g+ ++v
Y73B6BL.6 73 AFVEFTTGEGCKLALA-AREQTIKGKSVEV 101
rrm: domain 2 of 2, from 112 to 182: score 80.8, E = 2.4e-22
*->lfVgNLppdvteedLkdlFskfGpivsikivkDhiekpketgkskGf
+fVg+Lp d++e+dL+ +F++fG++ +i+ + D k+t+ ++f
Y73B6BL.6 112 VFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFD-----KQTKARRNF 153
aFVeFeseedAekAlealnGkelggrklrv<-*
aF+ Fe+ee+A+kA + ++++g r++ v
Y73B6BL.6 154 AFIVFEEEESADKASS-QTKQTFGTRECDV 182