Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm5/seq/Y73B6BL.1
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Query:  Y73B6BL.1  CE29922    status:Partially_confirmed TR:Q95XC6 protein_id:AAK68589.2

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N
--------   -----------                                  -----    ------- ---
tyrosinase Common central domain of tyrosinase           59.0    1.4e-15   2
hemocyanin Hemocyanin, copper containing domain          12.0      0.035   1
DUF205     Domain of unknown function DUF                 2.9        9.7   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
tyrosinase   1/2      42    76 ..   102   138 ..    31.9    5e-08
hemocyanin   1/1     190   206 ..   280   296 .]    12.0    0.035
DUF205       1/1     192   206 ..   219   233 .]     2.9      9.7
tyrosinase   2/2     166   265 ..   265   379 .]    29.1    3e-07

Alignments of top-scoring domains:
tyrosinase: domain 1 of 2, from 42 to 76: score 31.9, E = 5e-08
                   *->vHesplFlpWHRwYLyfyEriLgklindptFAlPYWn<-*
                      +H +p+FlpWHR +L ++E +L+  +  pt++lPYW+
   Y73B6BL.1    42    AHWGPAFLPWHREFLRQFEIALQTEV--PTVTLPYWD    76

hemocyanin: domain 1 of 1, from 190 to 206: score 12.0, E = 0.035
                   *->DPvFYrlhkrIdnifqe<-*
                      DP FY+ h +Idn+  +
   Y73B6BL.1   190    DPTFYMHHAFIDNLWEK    206

DUF205: domain 1 of 1, from 192 to 206: score 2.9, E = 9.7
                   *->viyrHReNIkRLlnG<-*
                      ++y H++ I +L+++
   Y73B6BL.1   192    TFYMHHAFIDNLWEK    206

tyrosinase: domain 2 of 2, from 166 to 265: score 29.1, E = 3e-07
                   *->neplHNpvHiwtGgntkynlPngisngedMgsfysaafDPIFylHHs
                      +e++H + H+w+Gg               M    ++++DP Fy HH+
   Y73B6BL.1   166    FESMHGLSHVWVGG--------------FMYVIRVSPNDPTFYMHHA 198

                   NVDRlWsiW....kalggksFrtdfpeadwlishfrfydenpfppkrvkv
                   + D lW+  +++++++ +      +  +++ ++h +   ++pf+   ++
   Y73B6BL.1   199 FIDNLWEKFrqnsQTREER--ENQWATKNCNDNHGFDVQMKPFTI-QNRD 245

                   rDcfdtsrpklGYdYedqptpw<-*
                   + ++ +   +  Y Y+++ + +
   Y73B6BL.1   246 GLSNQYT--DEWYEYQPVRHCS    265



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