Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y71H2B.5
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Query: Y71H2B.5 CE29003 status:Partially_confirmed TR:Q9N4F1 protein_id:AAK93869.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
UPF0021 PP-loop family UPF0021 59.2 1.4e-15 1
tRNA_Me_trans tRNA methyl transferase 2.2 5.1 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
tRNA_Me_trans 1/1 657 669 .. 1 13 [. 2.2 5.1
UPF0021 1/1 658 826 .. 1 180 [. 59.2 1.4e-15
Alignments of top-scoring domains:
tRNA_Me_trans: domain 1 of 1, from 657 to 669: score 2.2, E = 5.1
*->mkVvVaMSGGVDS<-*
+kV+V +SGG DS
Y71H2B.5 657 DKVLVCLSGGKDS 669
UPF0021: domain 1 of 1, from 658 to 826: score 59.2, E = 1.4e-15
*->kiLvAvSGGlDSmvLLylLkklkpkla....pgiineltaaHvdHgl
k+Lv +SGG+DS+ LL++L++++ + + ++ ++ el+a++vd
Y71H2B.5 658 KVLVCLSGGKDSLSLLHILRHYQQRCNkarsTSF--ELGAITVD--- 699
RGeeSde.eakfVkelCkklnipleilrvdvdaiakksglnleeaARec.
+ S+e + + e+C++lni++++++ d+ a+++ +l + c
Y71H2B.5 700 --PGSAEyNPRPLIEYCRRLNIDYFYEEQDII-GAARKTPGLRSI---Ca 743
yCGvaRYdfferiakkngadvlltAHHaDDqaETfLmrLlRGsgllGLag
+C + + ++ +a+ +g +vl+ ++H+DD aE f+ + ++ +L+
Y71H2B.5 744 FCSRMKRGRLAAAAQLHGWNVLAMGQHLDDLAESFFIAAFQNG---NLST 790
ikasvrefn.sggrgrivRPLLykvsKeeieeyakkhkip<-*
+ka+++ ++ g r++RPL v+ + + ++a+ +k+p
Y71H2B.5 791 MKAQYT--TkDGA-LRVIRPLV-MVREKALRNFAEDKKLP 826