Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm5/seq/Y71H2AM.12
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  Y71H2AM.12  CE27318    status:Partially_confirmed TR:Q9BL44 protein_id:AAK29982.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
ras      Ras family                                     135.2    4.6e-39   2
ABC_tran ABC transporter                                  4.7        3.3   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ABC_tran   1/1       6    23 ..     1    18 [.     4.7      3.3
ras        1/2       8   129 ..     1   132 [.   129.2  2.7e-37
ras        2/2     144   159 ..   151   166 ..     6.0      1.1

Alignments of top-scoring domains:
ABC_tran: domain 1 of 1, from 6 to 23: score 4.7, E = 3.3
                   *->GevlalvGpNGaGKSTLL<-*
                        ++++vG++GaGK+ LL
  Y71H2AM.12     6    TVKVVVVGESGAGKTALL    23

ras: domain 1 of 2, from 8 to 129: score 129.2, E = 2.7e-37
                   *->KlVliGDsGVGKSsLliRFtdnkFveeYipTIGvDFytktvevD.Gk
                      K+V++G+sG GK++Ll  F dn+F ++  +TIG+DF+ k+v +++G+
  Y71H2AM.12     8    KVVVVGESGAGKTALLTCFLDNTFETDPLTTIGIDFKHKIVQLNdGQ 54

                   tvkLqIWDTAGQERFralrpaYYRgAqGfLLVYDITsrdSFenvkkWlee
                    ++Lq+WDTAGQERFr l+paY R A ++LLV D  ++   e++ +W
  Y71H2AM.12    55 SIRLQLWDTAGQERFRQLAPAYIRSARVALLVIDLSDENCVEHLIRWKGI 104

                   ilrhadkdenvpivLVGNKcDLeddedleltegqkR<-*
                   i++ ++  + +  ++VGNK DL   e        kR
  Y71H2AM.12   105 IDKNKS--DFTSTIIVGNKHDLVS-E--------KR    129

ras: domain 2 of 2, from 144 to 159: score 6.0, E = 1.1
                   *->FmETSAKtntNVeeaF<-*
                      ++ETSAK ++N+++ F
  Y71H2AM.12   144    YIETSAKMRKNIKKLF    159



[DB home][top]