Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y71H2AM.19
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Query: Y71H2AM.19 CE27320 status:Predicted TR:Q9BL37 protein_id:AAK29980.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
DEAD DEAD/DEAH box helicase 94.7 3.7e-28 1
NB-ARC NB-ARC domain 6.8 0.44 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
NB-ARC 1/1 6 28 .. 326 348 .] 6.8 0.44
DEAD 1/1 376 463 .] 1 69 [. 94.7 3.7e-28
Alignments of top-scoring domains:
NB-ARC: domain 1 of 1, from 6 to 28: score 6.8, E = 0.44
*->ydipkkqlislWiaegfvtesne<-*
++i+kk+li ++ a+ f++esn
Y71H2AM.19 6 QKIEKKRLIAYLRACYFLMESNQ 28
DEAD: domain 1 of 1, from 376 to 463: score 94.7, E = 3.7e-28
*->kalkklgfekptpiQaeaipailegrDvlvqApTGSGKTlAfllPil
+++k g+ +ptp+Q+ +ipa+ grD++ +A+TGSGKT+Afl P++
Y71H2AM.19 376 ENIKTAGYDRPTPVQKYSIPALQGGRDLMSCAQTGSGKTAAFLVPLV 422
eallkg...................pqalvlaPTRELAnQi<-*
+a+l+++++ +++ +++++++++ p alvl+PTREL +Q+
Y71H2AM.19 423 NAILQDgpdavhrsvtssggrkkqyPSALVLSPTRELSLQV 463