Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y71A12B.1
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Query: Y71A12B.1 CE24592 locus:rps-6 40S ribosomal protein S6 status:Confirmed TR:Q9NEN6 protein_id:CAB81996.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Ribosomal_S6e Ribosomal protein S6e 247.0 2.4e-70 1
DUF448 Protein of unknown function (DUF448) 4.7 7.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF448 1/1 20 49 .. 54 84 .] 4.7 7.8
Ribosomal_S6e 1/1 1 127 [. 1 140 [] 247.0 2.4e-70
Alignments of top-scoring domains:
DUF448: domain 1 of 1, from 20 to 49: score 4.7, E = 7.8
*->ekAkkkkafsrafkikvskldqvydeleelv<-*
e++k++ +f+++ +++ ++d ++de + +v
Y71A12B.1 20 EEKKLRLFFEKR-MSQEVAIDALGDEWKGYV 49
Ribosomal_S6e: domain 1 of 1, from 1 to 127: score 247.0, E = 2.4e-70
*->mklnvSdPatGGtydGidmiGdyitqkliEvDdehrlRvFyeKrlGq
m+ln ++PatG qk +EvD+e++lR F eKr+ q
Y71A12B.1 1 MRLNFAYPATG-------------LQKSFEVDEEKKLRLFFEKRMSQ 34
eVdGdavGdEfkGYvLkitGGnDkqGFPMrqgVlgsrrVrlLlskGhscy
eV+ da+GdE+kGYv++i GGnDkqGFPM+qg+l+++rVrlLl+kG scy
Y71A12B.1 35 EVAIDALGDEWKGYVVRIGGGNDKQGFPMKQGILTNGRVRLLLKKGQSCY 84
rPrRdGERkRksVRGciVdaDlsvlnlkivkkGekdIpgLtdd<-*
r r++GERkRksVRGciVda++s l l+ivkkG+ +I+gLtd
Y71A12B.1 85 RERKNGERKRKSVRGCIVDANMSALSLVIVKKGDGEIEGLTDS 127