Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y6D11A.2
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Query: Y6D11A.2 CE30060 status:Partially_confirmed TR:Q8WTM6 protein_id:AAL32261.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
p34-Arc Arp2/3 complex, 34kD subunit p34-Arc 483.3 1.9e-141 1
Fe_hyd_lg_C Iron only hydrogenase large subunit, C-te 2.6 1.1 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Fe_hyd_lg_C 1/1 194 206 .. 19 31 .. 2.6 1.1
p34-Arc 1/1 56 289 .. 1 277 [] 483.3 1.9e-141
Alignments of top-scoring domains:
Fe_hyd_lg_C: domain 1 of 1, from 194 to 206: score 2.6, E = 1.1
*->qtAPAVRvalGEe<-*
qtAPAV+++lGE+
Y6D11A.2 194 QTAPAVLYSLGEP 206
p34-Arc: domain 1 of 1, from 56 to 289: score 483.3, E = 1.9e-141
*->llSvSLkaypsEAmsfellkhGaleLLKFLADHYssvYGsllqekDP
lS+SLk+y el++hGa++LL +vYG + +
Y6D11A.2 56 ILSISLKFYT------ELQQHGADDLLR-------RVYGGHMRST-- 87
PEdGYnvtLlinLselpadeeskeslakkisllASLkrnvlaapFekiFq
PE+G+nvtL +nL+ lpad l+ +s Lkrn++a++Fek+F+
Y6D11A.2 88 PEQGFNVTLEYNLADLPAD---TTDLVQAASA---LKRNCFASVFEKYFE 131
kqeakkeaeerDrEvAanlDkqatsqeLvaInYRddETiylkPqaDrVTV
+qea++e+ +r ++InYRddET+y++++aDrVTV
Y6D11A.2 132 FQEAGQEGHKR-----------------AVINYRDDETMYIEAKADRVTV 164
vFstiFkDedDvIlGKvFLQEFVdaRRRaaaiqtAPqVlFShrePPLELk
+Fst+FkD+dDvI+GKvFLQEF+++R+ a+qtAP Vl+S ePPLELk
Y6D11A.2 165 IFSTVFKDADDVIIGKVFLQEFREGRK---ASQTAPAVLYSLGEPPLELK 211
gvdgParvgdaniGFVTFVLFPRHfekkkrdntinliqtFRdYLHYHIKc
+++ arvgd n G++TFVLFPRH++kk++dnti+li+ FRdYLHYHIKc
Y6D11A.2 212 DLPE-ARVGD-NVGYITFVLFPRHTNKKTKDNTIDLIHSFRDYLHYHIKC 259
sKaYmHsrMRarvssfikVLNRAkPdpent<-*
sK Y H+rMRa++ +f+kVLNRA+P+++ +
Y6D11A.2 260 SKVYLHTRMRAKTTDFLKVLNRARPEVKGE 289