Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y69A2AR.19
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Query: Y69A2AR.19 CE29903 status:Partially_confirmed TR:Q95XJ2 protein_id:AAK68563.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Y_phosphatase Protein-tyrosine phosphatase 220.0 3.6e-62 1
WSN Domain of unknown function 68.0 1.5e-17 1
DSPc Dual specificity phosphatase, catalyti 14.3 0.0097 1
Euk_porin Eukaryotic porin 3.7 3 1
OKR_DC_1_C Orn/Lys/Arg decarboxylase, C-terminal 3.5 9.7 1
pfkB pfkB family carbohydrate kinase 2.8 6.3 1
URO-D Uroporphyrinogen decarboxylase (URO-D) 2.5 7.7 1
Enterotoxin_HS Heat-stable enterotoxin 1.8 4.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
WSN 1/1 168 236 .. 1 72 [] 68.0 1.5e-17
Euk_porin 1/1 248 272 .. 1 26 [. 3.7 3
URO-D 1/1 281 295 .. 344 358 .] 2.5 7.7
pfkB 1/1 560 577 .. 63 80 .. 2.8 6.3
Enterotoxin_HS 1/1 663 684 .. 1 25 [. 1.8 4.6
OKR_DC_1_C 1/1 674 693 .. 110 129 .. 3.5 9.7
DSPc 1/1 1092 1123 .. 94 125 .. 14.3 0.0097
Y_phosphatase 1/1 935 1159 .. 1 264 [. 220.0 3.6e-62
Alignments of top-scoring domains:
WSN: domain 1 of 1, from 168 to 236: score 68.0, E = 1.5e-17
*->skLqtvienlsilaRVtNAIsLqaglingsiksddvIaELLniGtin
sk ++++++ +a+++N+I+Lqagl+ gsi++d +++ELLn ++
Y69A2AR.19 168 SKSADYLNHTTLIAHIANGIALQAGLMKGSIPIDAAVSELLN---FG 211
psqlselinvdlkkiveglngLkei<-*
++++s++ +++++i + +++ ++
Y69A2AR.19 212 SVKVSDITAFKPDQITALIDKSDTS 236
Euk_porin: domain 1 of 1, from 248 to 272: score 3.7, E = 3
*->nPgtyedlgKkarDllnkdyYhfegl<-*
Pgt e+lg k++ + n d +f +l
Y69A2AR.19 248 LPGTLETLGSKVKEIINMD-VSFDKL 272
URO-D: domain 1 of 1, from 281 to 295: score 2.5, E = 7.7
*->ppenlkalveavhel<-*
p+e+l +lve ++++
Y69A2AR.19 281 PLERLMHLVELRRSY 295
pfkB: domain 1 of 1, from 560 to 577: score 2.8, E = 6.3
*->iGkvGdDefGefllelLk<-*
i+k+Gd +fG+f++e+Lk
Y69A2AR.19 560 ITKIGDSTFGDFIKEELK 577
Enterotoxin_HS: domain 1 of 1, from 663 to 684: score 1.8, E = 4.6
*->QetesgqvgdsssekItaEvnkkkC<-*
Q++ s + se I++E+ +k++
Y69A2AR.19 663 QSVSS---LQDASELIELESAIKEL 684
OKR_DC_1_C: domain 1 of 1, from 674 to 693: score 3.5, E = 9.7
*->LlsLeeginhlPGFepeiqG<-*
L+ Le+ i++l GF pei G
Y69A2AR.19 674 LIELESAIKELKGFGPEIDG 693
DSPc: domain 1 of 1, from 1092 to 1123: score 14.3, E = 0.0097
*->eavdFIdkarqkggkVLVHCqAGiSRSAtlii<-*
+++d ++ a+++ +++ VHC AGi R++++i+
Y69A2AR.19 1092 QCFDLMNMAKESKKPIVVHCSAGIGRTVSFIA 1123
Y_phosphatase: domain 1 of 1, from 935 to 1159: score 220.0, E = 3.6e-62
*->NkeKNRyk.dilpyDhtRVkLk..egsDYINAnyidgpqsrtl.vvy
keKNR++ ++++ t V + +++ I+An+i++ + v+
Y69A2AR.19 935 PKEKNRRPlATPCNPETAVEVMsdGTRIPIHANWINT-----SpDVD 976
kkpkayIaTQgPlpnTieDFWrMvweqkvtvIVMLtklvEkgreeeKtCa
++ ++IaTQgPlpnT +DFW Mv +kv+++VML+++vEk eK C+
Y69A2AR.19 977 GNTQKFIATQGPLPNTSDDFWTMVQFHKVETVVMLCQFVEKEE--EK-CH 1023
qYWPeeggeeggsltyGditVtlvseekkddddytvRtleltn.gdeskn
+Y+P g+ + +++ ++v e+ + d Rt++++++
Y69A2AR.19 1024 EYFPV---RTGQIVDLERYKLKTVTQEQILGDSTSKRTIQVEDtS----- 1065
eakqeklkgetrtVthyhytgWPDhgvPesgpkslldflrkvrksqsqen
k++ +trt+thy+y++WPD+g+P + +d++++ ++s++
Y69A2AR.19 1066 --KEF----PTRTITHYQYHSWPDQGIPQG-HAQCFDLMNMAKESKK--- 1105
esgeaspdsgprSsctgPivVHCSAGiGRTGtfiaidillqqleaegvvi
PivVHCSAGiGRT fia ++ + a+ +
Y69A2AR.19 1106 -----------------PIVVHCSAGIGRTVSFIATQYIPSAVLANRTL- 1137
difdivkelRsqRpgmVQteeQ<-*
+ ++v elR+qR+ ++Qt eQ
Y69A2AR.19 1138 VLNQAVAELRDQRWCAIQTVEQ 1159