Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y67H2A.1
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Query: Y67H2A.1 CE28423 status:Partially_confirmed TR:Q95PY8 protein_id:CAC44310.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
lactamase_B Metallo-beta-lactamase superfamily 50.1 1.6e-13 1
laminin_G Laminin G domain 5.2 3.3 1
UPF0122 Putative helix-turn-helix protein, YlxM / 5.0 5.9 1
MutH DNA mismatch repair enzyme MutH 4.2 4.2 1
MGAT2 N-acetylglucosaminyltransferase II (MGAT2 0.5 3.2 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
UPF0122 1/1 123 143 .. 88 108 .] 5.0 5.9
lactamase_B 1/1 23 213 .. 1 143 [] 50.1 1.6e-13
MutH 1/1 270 308 .. 56 96 .. 4.2 4.2
laminin_G 1/1 513 534 .. 134 155 .] 5.2 3.3
MGAT2 1/1 699 708 .. 1 10 [. 0.5 3.2
Alignments of top-scoring domains:
UPF0122: domain 1 of 1, from 123 to 143: score 5.0, E = 5.9
*->qlkdkqleqklkliqqldelE<-*
++ +++le++++ i+ +d +E
Y67H2A.1 123 LYTEDDLEKSMAKIETIDFRE 143
lactamase_B: domain 1 of 1, from 23 to 213: score 50.1, E = 1.6e-13
*->gvnsyLvedptgggavLiDtGlgg.a.llllallkllldpddiddnl
g+++ L+e g++v+ D+G +++ + + + ++ id
Y67H2A.1 23 GRSCHLLE--YKGKRVMLDCGVHPgLhGVDALPFVDFVEIENID--- 64
pelealirldkddddkdeedIaillTHaHlDHiGG...............
+l+TH+HlDH+G+ + + +
Y67H2A.1 65 ---------------------LLLITHFHLDHCGAlpwllqktafqgkcf 93
..................................................
++ + + ++++ +++++ +++++ + ++ + +
Y67H2A.1 94 mthatkaiyrmllgdyvriskyggpdrnqlyteddleksmakietidfre 143
...............................vlftGDllfs.gtgr.dl.
++ + +++ +++ + + ++ vl+tGD+ +++ + ++
Y67H2A.1 144 qkevngirfwpyvaghvlgacqfmieiagvrVLYTGDFSCLeDRHLcAAe 193
........liaestyslrklpggdaedlypslaelllesllklaalpdtv
++ ++ li esty+ +
Y67H2A.1 194 ippitpqvLITESTYGTQ-------------------------------- 211
vpPgH<-*
+H
Y67H2A.1 212 ---TH 213
MutH: domain 1 of 1, from 270 to 308: score 4.2, E = 4.2
*->fetShvrhKlskilllfyeGlrDgiPledrvIkepvLwemh<-*
++ S++ +K+ + f++G+ + ++ +k p+ ++ h
Y67H2A.1 270 YYASSLAKKCMSVYQTFVNGMN-SRIQKQIAVKNPFIFK-H 308
laminin_G: domain 1 of 1, from 513 to 534: score 5.2, E = 3.3
*->aaistsFkGCirdvsingkpld<-*
+++s ++G ++ +++n ++l+
Y67H2A.1 513 QRMSVHYSGSLKLLIFNLQQLN 534
MGAT2: domain 1 of 1, from 699 to 708: score 0.5, E = 3.2
*->nltLkkReiV<-*
nlt+k R+iV
Y67H2A.1 699 NLTEKMRQIV 708