Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y65B4A.9
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Query: Y65B4A.9 CE22732 status:Partially_confirmed TR:Q9BL55 protein_id:AAK29951.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
pkinase Protein kinase domain 60.8 9.2e-16 2
MT-A70 MT-A70 2.9 6.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
pkinase 1/2 21 51 .. 1 32 [. 23.1 2.5e-05
MT-A70 1/1 143 155 .. 181 195 .] 2.9 6.9
pkinase 2/2 89 172 .. 71 149 .. 36.3 5.8e-09
Alignments of top-scoring domains:
pkinase: domain 1 of 2, from 21 to 51: score 23.1, E = 2.5e-05
*->yelleklGeGsfGkVykakhkdktgkiVAvKi<-*
ye+ ++l G+fG++yk+k+ ++gk +AvK+
Y65B4A.9 21 YEVTKPLATGTFGSIYKVKRE-SDGKFFAVKC 51
MT-A70: domain 1 of 1, from 143 to 155: score 2.9, E = 6.9
*->RdhnlrPgWltwGne<-*
Rd + P+ +++G+e
Y65B4A.9 143 RD--IKPSHFCIGRE 155
pkinase: domain 2 of 2, from 89 to 172: score 36.3, E = 5.8e-09
*->ddhlylvmEymegGdLfdylrrng..gplsekeakkialQilrGleY
++ l +vm++ + L++++++ ++++++s+ +++a Q+l ++
Y65B4A.9 89 NRFLFIVMPLYGE-NLYELMMNTNkdRKFSMATGLHLAEQTLAAIRD 134
LHsngivHRDLKpeNILlden....dgtvKiaDFGLAr<-*
LH+ng++HRD+Kp+ + + ++ ++++++v + DFGL++
Y65B4A.9 135 LHRNGFIHRDIKPSHFCIGREidgqHHQVYLLDFGLCK 172