Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y62E10A.11b
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Query: Y62E10A.11b CE22701 status:Partially_confirmed SW:Q9U1X4 protein_id:CAB60600.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Mss4 Mss4 protein 167.9 1.7e-46 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Mss4 1/1 1 86 [. 1 116 [] 167.9 1.7e-46
Alignments of top-scoring domains:
Mss4: domain 1 of 1, from 1 to 86: score 167.9, E = 1.7e-46
*->ndeevlnqerqdrVdlPlmeqkkrrqdalPSesNFLvvpdvwDfdnv
+++e+l++er dlPl++qkk++ d++
Y62E10A.11 1 MTTEYLDEER----DLPLPRQKKGI-------------------DHT 24
eseplkdfflvkDmSDKSDFaFENvgfSkkvkknlKyLvCADCEkGPiGy
++ep+++ff+vkDm FaFENvgf+++++ +++yLvC++CE+GP+G+
Y62E10A.11 25 QTEPIRGFFGVKDM-----FAFENVGFTRSSE-GKRYLVCGECEQGPVGF 68
hDlvteetyYvaleRvehl<-*
+D+vte++y v++eR+++l
Y62E10A.11 69 VDPVTEMNY-VSPERLDVL 86