hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm5/seq/Y60A3A.13
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Query:  Y60A3A.13  CE26224    status:Confirmed TR:Q9U1Z3 protein_id:CAB60398.2

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N
--------     -----------                                -----    ------- ---
tRNA-synt_2d tRNA synthetases class II core domain (F   297.0    8.2e-96   1
FDX-ACB      Ferredoxin-fold anticodon binding domain    81.7    1.9e-21   1
tRNA-synt_2  tRNA synthetases class II (D, K and N)       6.7       0.73   1
Ribosomal_S7 Ribosomal protein S7p/S5e                    1.8        9.1   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
tRNA-synt_2    1/1     317   335 ..   352   370 ..     6.7     0.73
tRNA-synt_2d   1/1      83   335 ..     1   279 []   297.0  8.2e-96
Ribosomal_S7   1/1     417   442 ..    37    63 ..     1.8      9.1
FDX-ACB        1/1     363   458 .]     1    97 []    81.7  1.9e-21

Alignments of top-scoring domains:
tRNA-synt_2: domain 1 of 1, from 317 to 335: score 6.7, E = 0.73
                   *->lGlGiDRliMlltdahnIR<-*
                      +G+G++R++M l++ + IR
   Y60A3A.13   317    FGIGLERIAMVLYGIPDIR    335

tRNA-synt_2d: domain 1 of 1, from 83 to 335: score 297.0, E = 8.2e-96
                   *->PltrtieeiediFvsmGFee.vdgp.F.vY.egpevEtdfyNFDaLn
                      Pl+ ++ +i+d+ ++ + + + ++p F+  +  p v+t+++NFD+L
   Y60A3A.13    83    PLNLLKRRIVDYVHQTYRKPgNRSPlFtICeSEPRVVTTYQNFDSLL 129

                   iPqdHPARdmqDTFYlkrPkgdelPdedlveRVkavHErGtGSGWkYeWd
                    P+dH++R  +DT+Y++
   Y60A3A.13   130 TPEDHVSRRPSDTYYVN--------------------------------- 146

                   eerarkllLRTHTSavqaRtLaelkdegpnpPikifspGrVYRrDavDaT
                        +++LR+HTSa+q  +++++ d+       ++++G+VYRrD+vD+T
   Y60A3A.13   147 ----HEHCLRAHTSAHQHNLMQSGLDA-------FLVIGDVYRRDEVDRT 185

                   HlpeFHQvEGlvvdkgvslf..............................
                   H+p FHQ+EG+++  +  l ++++++++  +  ++  +  ++++++++++
   Y60A3A.13   186 HYPCFHQIEGVRLYSKDELLgkkpdgknvaelfstaasaaterspekqek 235

                   ...EevklvfadLKgtLeeflrsfFGeekevkvRFrPsYFPFTEPSaEvd
                   ++ +++k++   LK +Le+++ ++FG+  + + R++++YFPFT+PS+E++
   Y60A3A.13   236 htlDATKAAEIQLKQFLENLCDELFGK--DAEKRWVDAYFPFTHPSWELE 283

                   vycegckgkGkDCrvCkktgWlEvlGcGMvhPeVLeavGidpeveysGfA
                   v+  g               WlEvlGcG++ + +Le +G+ +    +G+A
   Y60A3A.13   284 VFYNG--------------QWLEVLGCGIMEQKLLESAGVTDK---IGWA 316

                   FGlGlERlAMLkYGIpDIR<-*
                   FG+GlER+AM++YGIpDIR
   Y60A3A.13   317 FGIGLERIAMVLYGIPDIR    335

Ribosomal_S7: domain 1 of 1, from 417 to 442: score 1.8, E = 9.1
                   *->KKslArrIvYkAfeiiaertggedPlq<-*
                      KKs+ +rIvY + e+   ++ + ++++
   Y60A3A.13   417    KKSQTYRIVYRSHERALTKE-EVNVIH    442

FDX-ACB: domain 1 of 1, from 363 to 458: score 81.7, E = 1.9e-21
                   *->SkYPAvfRDlAlvvpkdvpvaan....eleealkkaggdlLEsVeLF
                      S +P v+ D+++++p  v+  +n+ ++++++ ++++gg+l+E+V+L
   Y60A3A.13   363    SAHPQVIFDISFFLPSTVQ--FNdmtsDVYDTIRTVGGELVEQVKLT 407

                   DvYthGeqvgeGkKSlalrLvyRspeRTLtdeEvneaheklvaalkerfg
                   D +++  + +e kKS ++r+vyRs+eR Lt eEvn +h ++ ++l+  fg
   Y60A3A.13   408 DEFEN--KKKE-KKSQTYRIVYRSHERALTKEEVNVIHKQIEQSLASSFG 454

                   veLR<-*
                   v LR
   Y60A3A.13   455 VTLR    458

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