hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm5/seq/Y5H2B.5
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Query:  Y5H2B.5  CE26222    status:Partially_confirmed TR:Q9N4Q5 protein_id:AAF59629.2

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N
--------       -----------                              -----    ------- ---
p450           Cytochrome P450                          335.5   2.5e-104   1
Neur_chan_memb Neurotransmitter-gated ion-channel tra     2.9        5.1   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
Neur_chan_memb   1/1      45    56 ..   280   291 .]     2.9      5.1
p450             1/1      83   510 ..    36   494 .]   335.5 2.5e-104

Alignments of top-scoring domains:
Neur_chan_memb: domain 1 of 1, from 45 to 56: score 2.9, E = 5.1
                   *->pivfvlGTlgyf<-*
                      p v ++GTl+yf
     Y5H2B.5    45    PAVLIFGTLWYF    56

p450: domain 1 of 1, from 83 to 510: score 335.5, E = 2.5e-104
                   *->ifrlylGsrpvvvlsgpelvkevLikkgeefsgrpdeawfatlsvpf
                      ++ l+lG+ p+v++   e++k vL+     ++   ++  ++     +
     Y5H2B.5    83    VLKLWLGPIPAVNIARGEIAKIVLDSSVNISKSS-QYNKLKE----W 124

                   rgkgilfsdgGprWkalRrlltptfrsfgmgklkslepriqeeaddlver
                   +g+g+l s+g ++W+++R++lt+tf++     lk++ +++  ++ +lve
     Y5H2B.5   125 IGDGLLISTG-DKWRSRRKMLTQTFHFA---VLKEYQKIFGAQGKILVEV 170

                   lrktagepgsgrviditellsravlnvIcsilFgvrfdsledeealplvk
                   l+  a+  +s   +di++++ r++l++Ic +++g++++s    ++ ++v+
     Y5H2B.5   171 LQLRANNKFS---FDIMPYIKRCALDIICETAMGCSISSQRGAND-EYVN 216

                   lvqelll.lvsspdhqlldlfplllylpgphlrkfkearkelkdyldkli
                    v+ l++ +++++  + + l+p ++yl+g  ++  +++ k   d+++++i
     Y5H2B.5   217 SVRRLSEiVWNYEKAPQFWLKP-IWYLFGDGFEFNRHV-KLTTDFTRDVI 264

                   eerretldddgeee.ekkksprdfldalllaknaemeeekdgereselsd
                   e r+++l++ +  ++ +  +++ fld+ll ++       ++++    l+d
     Y5H2B.5   265 ENRKKELKTHN--SeQNETKKLAFLDYLLKSQ-------EEHP--DILTD 303

                   eelaatvldllfAGteTTsstlswaLylLakhPevqaklreEidevigdh
                   e ++ +v++++f+G++TTss++++a+ +L + Pe q++++ E+de++g +
     Y5H2B.5   304 EGIREEVDTFMFEGHDTTSSGITFAVWFLGQFPEYQQRVHDELDEIFGED 353

                   rkeisptydDlqnmPyldavIkEtLRlypvvpnlllpRvatkDteigG..
                    +   p  +D+q+m yl+++IkEtLR+ p+vp   + R++t+D++i+  +
     Y5H2B.5   354 FER-IPNSEDIQKMVYLEQCIKETLRMTPPVP--FVSRKLTEDVKIPHat 400

                   ...ylIPKGtlVivnlyslhrDpkvfpnPeeFdPeRFldengtaivnfkr
                   +++ l+P+G ++++n+  +++D  +f++P eF Pe+F++e++    +  r
     Y5H2B.5   401 kpdLLLPAGINCMINIITIMKDARYFERPYEFFPEHFSPERV----AA-R 445

                   ksfaflPFGaGpRnClGerlArmElflfLatlLqrFeleplpgvdpppid
                    +faf+PF+aGpRnC+G+ +A +E +++L+++ ++F++  + + +++++
     Y5H2B.5   446 EPFAFVPFSAGPRNCIGQKFALLEEKVLLSWIFRNFTVTSMTKFPEEMPI 495

                   etpiisglvlppkpyklkf<-*
                   +      +++p+ + ++++
     Y5H2B.5   496 PEL----ILKPQFGTQVLL    510

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