Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm5/seq/Y57G11C.31
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Query:  Y57G11C.31  CE14982    status:Partially_confirmed TR:O18253 protein_id:CAB16530.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
DUF271   Protein of unknown function (DUF271)           407.7   1.1e-118   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
DUF271     1/2      71   187 ..     1   149 [.   155.9  7.1e-43
DUF271     2/2     208   343 ..   149   289 .]   246.2  4.4e-70

Alignments of top-scoring domains:
DUF271: domain 1 of 2, from 71 to 187: score 155.9, E = 7.1e-43
                   *->neisFeslhadveFnefaevL.kkmPkaPyVilesqplqnrkVkiqq
                        +s++s++ + eF  + + L++k+ ++P+++l
  Y57G11C.31    71    ETVSLSSIEESREFADLIDTLdRKFSRPPAIFL-------------- 103

                   NkvaIhIeFQydsSNvdvtlNHiCNlkFipnalsRlHENSVavafDeesh
                             ++++++++t+N++CN++++++a++R+     +v++D++++
  Y57G11C.31   104 ----------LNQYALNMTDNFLCNTATLDGAHERF----IFVTLDTVAR 139

                   laLkkkyPnIpnvlIdLppLkksfesVkEnrgyitYqLvlLvRanicaaL
                     +kk++P I ++++++p+L+k+f     +++++ Yq+++L+R+n+++aL
  Y57G11C.31   140 DTIKKRWPEIQQFHWPTPSLYKPF-----SFAEGPYQTIYLLRSNLALAL 184

                   akr<-*
                   +k+
  Y57G11C.31   185 IKK    187

DUF271: domain 2 of 2, from 208 to 343: score 246.2, E = 4.4e-70
                   *->rGkpFWmmQQDTfWtdNflnlnleenYpdadlLFDqiGNegfplydR
                      rGk+FWmmQQDTfW++N++++n+e+ + ++d++FDq+G e     +R
  Y57G11C.31   208    RGKSFWMMQQDTFWRKNIFDMNYEDDM-SYDAIFDQLGSEE-EHSMR 252

                   mreWicGAtFFvRgnptTyqfFeqlesfmlswysPDstiMtyLCghWsgY
                   +  W++GA+FF+R+n+ T+ fFe  ++++++wy+PD +iM+ +C +W ++
  Y57G11C.31   253 KE-WVNGANFFIRANNDTQLFFERMSEKLAHWYTPDMGIMIQQCHTWKKP 301

                   AkCefLPyslisswnyfeGtrenpPaLIQlDGEkklGgtKmdvL<-*
                     C+++P+++++sw+++++ ++ pP+L QlD+E+  Gg+K+++L
  Y57G11C.31   302 -VCAYIPHNVVYSWEWMFTEQKDPPYLMQLDCETD-GGSKLMQL    343



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