Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y57G11C.31
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Query: Y57G11C.31 CE14982 status:Partially_confirmed TR:O18253 protein_id:CAB16530.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
DUF271 Protein of unknown function (DUF271) 407.7 1.1e-118 2
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF271 1/2 71 187 .. 1 149 [. 155.9 7.1e-43
DUF271 2/2 208 343 .. 149 289 .] 246.2 4.4e-70
Alignments of top-scoring domains:
DUF271: domain 1 of 2, from 71 to 187: score 155.9, E = 7.1e-43
*->neisFeslhadveFnefaevL.kkmPkaPyVilesqplqnrkVkiqq
+s++s++ + eF + + L++k+ ++P+++l
Y57G11C.31 71 ETVSLSSIEESREFADLIDTLdRKFSRPPAIFL-------------- 103
NkvaIhIeFQydsSNvdvtlNHiCNlkFipnalsRlHENSVavafDeesh
++++++++t+N++CN++++++a++R+ +v++D++++
Y57G11C.31 104 ----------LNQYALNMTDNFLCNTATLDGAHERF----IFVTLDTVAR 139
laLkkkyPnIpnvlIdLppLkksfesVkEnrgyitYqLvlLvRanicaaL
+kk++P I ++++++p+L+k+f +++++ Yq+++L+R+n+++aL
Y57G11C.31 140 DTIKKRWPEIQQFHWPTPSLYKPF-----SFAEGPYQTIYLLRSNLALAL 184
akr<-*
+k+
Y57G11C.31 185 IKK 187
DUF271: domain 2 of 2, from 208 to 343: score 246.2, E = 4.4e-70
*->rGkpFWmmQQDTfWtdNflnlnleenYpdadlLFDqiGNegfplydR
rGk+FWmmQQDTfW++N++++n+e+ + ++d++FDq+G e +R
Y57G11C.31 208 RGKSFWMMQQDTFWRKNIFDMNYEDDM-SYDAIFDQLGSEE-EHSMR 252
mreWicGAtFFvRgnptTyqfFeqlesfmlswysPDstiMtyLCghWsgY
+ W++GA+FF+R+n+ T+ fFe ++++++wy+PD +iM+ +C +W ++
Y57G11C.31 253 KE-WVNGANFFIRANNDTQLFFERMSEKLAHWYTPDMGIMIQQCHTWKKP 301
AkCefLPyslisswnyfeGtrenpPaLIQlDGEkklGgtKmdvL<-*
C+++P+++++sw+++++ ++ pP+L QlD+E+ Gg+K+++L
Y57G11C.31 302 -VCAYIPHNVVYSWEWMFTEQKDPPYLMQLDCETD-GGSKLMQL 343