Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y57G11C.10
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: Y57G11C.10 CE14944 locus:gdi-1 GDI-1 GDP dissociation inhibitor status:Confirmed TR:Q21449 protein_id:CAB16511.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
GDI GDP dissociation inhibitor 1165.3 0 1
Peptidase_M17_N Cytosol aminopeptidase family, N-term 5.9 2.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Peptidase_M17_N 1/1 186 202 .. 119 135 .] 5.9 2.8
GDI 1/1 1 439 [. 1 474 [] 1165.3 0
Alignments of top-scoring domains:
Peptidase_M17_N: domain 1 of 1, from 186 to 202: score 5.9, E = 2.8
*->EGalLGlYrfdrfKskk<-*
+G +L+lYr+d+ K+++
Y57G11C.10 186 TGHALALYRDDEHKNQP 202
GDI: domain 1 of 1, from 1 to 439: score 1165.3, E = 0
*->MDEeYDVIVLGTGLkECILSGlLSvdGKKVLHiDRNdYYGGesASls
MDEeYD+IVLGTGLkECI+SG+LSv+GKKVLHiDRN+YYGGesASl+
Y57G11C.10 1 MDEEYDAIVLGTGLKECIISGMLSVSGKKVLHIDRNNYYGGESASLT 47
PLeqLYerFrggvePhsaLRnaRYtwheekppsetDaqsWnRDeklGrsR
PLeqLYe+F+g+ ++kp+ +++Gr+R
Y57G11C.10 48 PLEQLYEKFHGP---------------QAKPQ-----------QEMGRGR 71
DWNVDLiPKFLMANGeLVklLIhTdVTRYlEFKaVeGSYVykkgGkIhKV
DWNVDLiPKFLMANG+LVklLIhT+VTRYlEFK++e+S+V+k gGkI+KV
Y57G11C.10 72 DWNVDLIPKFLMANGPLVKLLIHTGVTRYLEFKSIEASFVVK-GGKIYKV 120
PanemEALsSpLMGlfEKRRfrkFleyVqdYdEdDpkThdglDpkkrtMk
Pa+emEAL+++LMG+fEKRRf+kFl++Vq++dE++++T++glDp+++tM+
Y57G11C.10 121 PADEMEALATSLMGMFEKRRFKKFLVWVQQFDENKEDTWQGLDPHNSTMQ 170
evykkFgLdentqDFiGHAlALyrdDdYLnqPaleTveRIkLYseSLaRY
+vy+kFgLdent+DF+GHAlALyrdD+++nqP++++ve+I+LYs+SLaRY
Y57G11C.10 171 QVYEKFGLDENTADFTGHALALYRDDEHKNQPYAPAVEKIRLYSDSLARY 220
GkssPYLYPlYGLGELPQGFARLSAIYGGTYMLnkPvdeivydedGkvvG
Gks PYLYPlYGLGELPQGFARLSAIYGGTYML+kPvdeiv+ e+Gk++G
Y57G11C.10 221 GKS-PYLYPLYGLGELPQGFARLSAIYGGTYMLDKPVDEIVM-ENGKAIG 268
VkSggevarakqVicDPSYfphlvdKvrkvGpqVvRaIcIlsHPipNeeT
Vk+g+e++r+kq++cDPSY++ d+v+k+G qVvRaIc+l+HPipN T
Y57G11C.10 269 VKCGDEIVRGKQIYCDPSYAK---DRVKKTG-QVVRAICLLNHPIPN--T 312
ndadSvQIIiPQkQvgRksDiYiscvSyaHnVapKGkYlAivSTtvETen
nda+S+QIIiPQkQvgR++DiYisc+S++++V+pKG+YlA+vSTtvET+n
Y57G11C.10 313 NDAQSCQIIIPQKQVGRHYDIYISCCSNTNMVTPKGWYLAMVSTTVETAN 362
PesElapgLdLLgpidekFvkisdlfePvddgskdqifiSkSYDATtHFE
Pe+E+ pgL+LLg+i+ekF++isd++eP+d gs++qifiS+SYDATtHFE
Y57G11C.10 363 PEAEVLPGLQLLGAIAEKFIQISDVYEPSDLGSESQIFISQSYDATTHFE 412
tttdDVldiyrritGkdLdlkdrqkka<-*
tt++DVl++++r+t+k++d++++++ +
Y57G11C.10 413 TTCKDVLNMFERGTTKEFDFTNITHLS 439