hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm5/seq/Y55F3C.3
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Query:  Y55F3C.3  CE29886    status:Partially_confirmed TR:Q95XV8 protein_id:AAK72074.2

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N
--------       -----------                              -----    ------- ---
ion_trans      Ion transport protein                    135.2    1.2e-36   1
K_tetra        K+ channel tetramerisation domain         97.6    1.4e-26   1
Na_H_Exchanger Sodium/hydrogen exchanger family           5.7        1.3   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
K_tetra          1/1      66   168 ..     1   107 [.    97.6  1.4e-26
Na_H_Exchanger   1/1     418   443 ..   421   446 .]     5.7      1.3
ion_trans        1/1     309   496 ..     1   228 []   135.2  1.2e-36

Alignments of top-scoring domains:
K_tetra: domain 1 of 1, from 66 to 168: score 97.6, E = 1.4e-26
                   *->ErvrLNVGGkrFeTsksTLtrfkpdTlLgrllktdsdvhearlrlcd
                       ++rLN+GG  ++++ + + +f p TlLgr+++ +   he r+++ d
    Y55F3C.3    66    SILRLNIGGSSYRIRTRSIIKFGPKTLLGRFVRMN---HEHRRQWAD 109

                   fyddetgEyFFDRsPkhFetILnfYRtGdGkLhrp.evcldsfleEleFy
                    y +e +EyFF+R P +F++I +fY t  GkLh+p+++c d f++El+F+
    Y55F3C.3   110 WYFEEQDEYFFERVPRYFDPIYDFYAT--GKLHVPkDLCFDKFMAELRFW 157

                   gldelaiesCc<-*
                     ++  +++Cc
    Y55F3C.3   158 AVSKSRMDECC    168

Na_H_Exchanger: domain 1 of 1, from 418 to 443: score 5.7, E = 1.3
                   *->ivvvlvTvlvqGitlkplvkklkvke<-*
                      ++vv++Tv+++ +tl +++++ ++ +
    Y55F3C.3   418    VGVVMMTVIIFFSTLIYFLERDEPGT    443

ion_trans: domain 1 of 1, from 309 to 496: score 135.2, E = 1.2e-36
                   *->ileildyvftviFtlEmllkiialgfklhsriprkYlrspwnilDfl
                      ++++++ v++++F +E+ +++i ++ k      +++ r + n++D+l
    Y55F3C.3   309    VFTWVENVCVIYFSIEYAMRFIVAPRK------LAFARQILNVIDLL 349

                   vvlpslislilflsgggsv.kl.ir.lreslflalsevsygilsvlrllR
                   ++ p++++l+l + g+ ++++ + r                 +  +rllR
    Y55F3C.3   350 SIAPFYFELLLWICGISGEnVRkVRwA---------------FLTVRLLR 384

                   llRvLRllrllrrapglfefelrtlGWklqslgrslkslfnlllllllll
                   +lRv R+ +l r++pg     l ++     ++ +s k++  ++++++ ++
    Y55F3C.3   385 VLRVIRIAKLGRFSPG-----LANF---ALTIRKSKKQMQMVGVVMMTVI 426

                   fifaiigvqlfggelnkccnpingntnFdnfgeaflwlFqtlTteGwgdi
                   + f+ + ++l  +e+          t+F++++  f+w+++t+ t+G+gd+
    Y55F3C.3   427 IFFSTLIYFLERDEPG---------TKFTSIPATFWWCVVTMATVGYGDL 467

                   mpdtlagtvlgkiyfvifiilggflllNlfiavi<-*
                   +p+    tv gk+++ +  i++g+ +l+l+i ++
    Y55F3C.3   468 VPV----TVAGKLVG-SGAIVCGVMVLALPITIM    496

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